Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3385 |
Symbol | uvrD |
ID | 4923925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4033576 |
End bp | 4035756 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640164997 |
Product | DNA-dependent helicase II |
Protein accession | YP_001095510 |
Protein GI | 127514313 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0210] Superfamily I DNA and RNA helicases |
TIGRFAM ID | [TIGR01075] DNA helicase II |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGACGTAT CTTCTTTACT CGACGGCTTA AACGACAAAC AGCGCGAGGC CGTCGGCGCA CCACAATCTA GCATGCTGGT GCTGGCAGGC GCGGGCAGTG GTAAGACCCG GGTACTGACC CACCGCATCG CCTGGCTGAT GCAAGTAGAG CAGCAGAGTC CCTATTCTAT TCTGGCGGTG ACCTTTACCA ACAAGGCCGC GGCCGAGATG CGCGAGCGTG TGGAGAAGGT GAGCGGCAGC AACATGGGCC GCATGTGGAT AGGTACCTTC CATGGCCTGG CCCACCGCCT GCTGCGCACC CATTATCAAG ACGCCAACTT GCCCCAGAGT TTCCAGATCC TCGACTCGGA CGACCAGCTC AGGCTGATCA AGCGGATCCT CAAGAGCCTC AACCTGGACG AGAAGCAGTA TCCGCCCCGT CAGGCCCAGG GCTACATTAA CGGCAAGAAA GATCAGGGGC TGAGACCCAA GCATATCGAT GCAGGTGGCT TCCCCATTGA GCAGAATCTG CTGAAGATCT ATCAGGTGTA TCAGGAGTCA TGCGATCGCG CCGGCCTGGT GGACTTTGCC GAGATCTTGC TAAGGGCCCA TGAGCTCTGG CTCAACAAGC CCCATATTCT GGAGCACTAT CAGGAGCGCT TTAAGAACAT CCTGGTGGAC GAGTTTCAGG ATACCAACGC CATCCAGTAT GCCTGGATCC GCGTGTTGGC CGGCAGCACG GCCAACGTGA TGATCGTCGG CGACGACGAC CAGTCTATCT ATGGTTGGCG CGGCGCCCAG GTGGAGAACC TGCACCGCTT CCTGCAGGAC TTCCCCGCGG CCCAGACCAT ACGTCTGGAA CAGAACTATC GCTCCAGCGG CAACATACTT AACGCCTCCA ACGAGCTGAT CGCCAATAAC CCGGACCGAC TGGGTAAGAA GCTGTGGACC GAAGACAAAG ACGGCGAGAA GATCGGCCTC TATTGCGCCT TCAACGAGAT GGATGAGGCC CGCTTCATCG TGGGTCGCAT CACGGACTGG CAGGATATGG GCGGTAACCT CAGCGATTGC GCCATCCTCT ATCGCTCCAA CGCCCAGTCG CGGGTACTGG AAGAGGCGCT GCTGCACAAG GGGATGGCCT ACCGCATCTA TGGCGGCCTG CGCTTCTTCG AGCGTCAGGA GATCAAGGAT GCCATGGGGT ATCTGCGGCT GATCAGCAAC AAGAACGACG ATGCCGCCTT CGAGCGTATC ATCAACACGC CGACCCGAGG CATAGGCGAT CGTACCCTGG ATATCCTGCG CAGTACGGCG CGCCAGCAGG AGCTGACCCT GTGGCAGACC TGCCTGCGCC TGCTCGATGA GAAGGTGCTC TCTGGCCGCG CCGCCAACGC GGTACGTAGC TTCATGGATC TAATCGTTAC TCTGCAGCAG GAGACGGCGG AGCAGTCGCT GCACCGCATG ACAGATCATG TTATCCAGGC CTCTGGCCTC AAGGCCATGT ATGAGGCGGA GAAGGGCGAG AAGGCCCGCG CCAGGGTGGA AAACTTAGAG GAGCTGGTCA CCGCGGCGCG CACCTTCGTG ATGCCGGAAG ATCTCGAGGA CATGGGTGAG CTAAATGCCT TCCTCTCCCA CGCGGCGCTC GAGGCGGGCG AGGGCCAGGC CGATGCCTTC ACCGACGCCG TGCAGCTGAT GACCTTGCAC TCGGCCAAGG GCCTGGAGTT CCCCATGGTC TTCATGGCAG GGGTCGAGGA GGGGATCTTC CCCAGCCAGA TGGCGATGGA TGAGGGCGAC AGGTTGGATG AGGAGCGCCG TCTCTGCTAC GTGGGTATGA CCCGCGCCAT GAAGCAGCTC TATATCACCT ATGCCGAGTC GCGCCGTATC TATGGCCGGG AAAACTATGC CCGTCCGTCA CGTTTCATCA AGGAGATCCC TGGCGACTAT GTGCAGGAGA TCCGCATGCG AACCAGCGTG TCGGCGCCGG CGAGCAGCAA CAGATTCGGT CAGGCCCAGC CCGCCTTTAA CGGTTCAGCC TTCAACGATT CCGGCTTCAA CATCGGCCAG CGGGTGAATC ATCCCAAGTT TGGTGAAGGC AAGGTGACCA ACTTCGAGGG TAGCGGCGCC CAGGCCAGAG TCCAGGTGGA TTTTCTCGAC GTGGGCAGCA AGTGGCTGGT GGTGGCATAT GCCCGTCTCG AGACACTGTA A
|
Protein sequence | MDVSSLLDGL NDKQREAVGA PQSSMLVLAG AGSGKTRVLT HRIAWLMQVE QQSPYSILAV TFTNKAAAEM RERVEKVSGS NMGRMWIGTF HGLAHRLLRT HYQDANLPQS FQILDSDDQL RLIKRILKSL NLDEKQYPPR QAQGYINGKK DQGLRPKHID AGGFPIEQNL LKIYQVYQES CDRAGLVDFA EILLRAHELW LNKPHILEHY QERFKNILVD EFQDTNAIQY AWIRVLAGST ANVMIVGDDD QSIYGWRGAQ VENLHRFLQD FPAAQTIRLE QNYRSSGNIL NASNELIANN PDRLGKKLWT EDKDGEKIGL YCAFNEMDEA RFIVGRITDW QDMGGNLSDC AILYRSNAQS RVLEEALLHK GMAYRIYGGL RFFERQEIKD AMGYLRLISN KNDDAAFERI INTPTRGIGD RTLDILRSTA RQQELTLWQT CLRLLDEKVL SGRAANAVRS FMDLIVTLQQ ETAEQSLHRM TDHVIQASGL KAMYEAEKGE KARARVENLE ELVTAARTFV MPEDLEDMGE LNAFLSHAAL EAGEGQADAF TDAVQLMTLH SAKGLEFPMV FMAGVEEGIF PSQMAMDEGD RLDEERRLCY VGMTRAMKQL YITYAESRRI YGRENYARPS RFIKEIPGDY VQEIRMRTSV SAPASSNRFG QAQPAFNGSA FNDSGFNIGQ RVNHPKFGEG KVTNFEGSGA QARVQVDFLD VGSKWLVVAY ARLETL
|
| |