| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3381 |
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| Symbol | |
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| ID | 4923921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4028756 |
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| End bp | 4030624 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164993 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001095506 |
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| Protein GI | 127514309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCCT TTAAGCTGTT GTTACTGCTG ATCACCCTGA GCTTCCCCGG CTTTAGCCAA
GGGGAGTCGC TGCTGGCGGT CAATAAAAAC CAGTCTATCG AGCTCGCCTC CTGGCTCTAT
TATGTGCAAG ATGATTCGCT GACCAGCCTG GAGCAGGTCA GCAAGCTAAG CTCCAGCCAC
TGGCAACGAC TGACCCCGGA ATTTAACCAG CACCTGGGGG TAGAGCCTTT CTGGGTCAAG
ATAAGCCTCT ACAACGCCAC TGATACCCAG ATGCGGCGCT ACCTTAAGCT GGGCAACCCG
CACCTGAATA GGGTCAGCCT GTACCACCTA CAGAGAGGTA AGCCGACAGT TCACCTGGAG
ATTGGCGACA GCTATCCGTT CAGCCAACGG CCCATCATCA ACAACGATTT CCTCTATCGT
TTCGAACTGA CGCCCGAGGT AGTGCACAGC TTCTATATTC GGGTCGATAC CGAGGGCAGT
GCTAACCTGC CCATCTCCCT GCTGTCGCCG GACCATATCG TCAAGGCCAC GGAGACACAG
TCCCTCTATC AGGGATTCCA GCTGGGCGCC CTGATGGCGA TTGGCCTGTT TAGCCTGTTT
ATCGCACTCA CCTCGCGCTC CTACAGCTAC AGCTATTACT CTGGCTATGT GTTGTCGGTG
ACCCTCTTGG TGGCCACCCT TCACGGCCTG TCGTTCCGTT ATCTCTGGCC TAACTGGCCC
GTGTTGCAGG CGGTGATGAT CCCCATACTG ATCCCGATCG CCCTCACCTT CGTGCTGATG
TTTTCCGAGA AGGTGCTGCA GCTCAAGTAC CACAACCTCA AGATGTTGAG GCTCTGTCGC
TACAGCGCCG CTACCGGGCT GTTTCTCACC TTGGTCACGC CGTTTTTAAG CTACTCTGTG
GCCCTCAAGG TCAACATAGT CGCCGTGCTG ATCACCACCA GTATGTTGAT GCTGATCGCC
CTGCTGCTGA GCCTACGAGG CCATAAGTTG GCCAGGCTCT ACACCCTGGC CTGGTCTGGG
ATGCTTATCG GCTCCTTCGT CACCGCCATG ATGTATCTGG GGGTCATCTA CCTGCCCATC
ATGCATCAGA CACCGATAAT GGTCGGCCTG AGCTTCGAAA TCGTCTTTAT GGCGGCGGTA
TTGGCGATTC GCTACAACGA CGAGCGTAAG GCCAAGCTCA AGATCCAGCA GGAAGCCTTG
CTGCAGGCCC AGCGGATCCG TCAGGCCCGG GAAGAGGCGC TGCAGATCGA GGCCGACAGC
AACGAACGCC TGGAGCAGAT GGTGCAGGAG CGCACGTTAG AGCTCGAGAT CGCACTTCGA
GAATTAAATG AGGCCAACCA GAAACTTACC GAACAAAACA CGGTCGATAG TCTCACAGGT
GTGAAAAACC GCGCCGCCTT CGAGAAACGC CTGCAGGCCG AAGGCCGCCT GAGTCGTCGT
CAACAGACGC CGCTGGCGAT CCTCATGATA GATATCGACC GCTTCAAGGC GATAAACGAC
ACCTATGGCC ACCTTGCCGG GGATCAGGCG CTCAAGACCA TAGCCCAGGC GTTAAAGGAA
AAATTAAGAC GCCCAAGTGA TCTGGTATCA CGTTTCGGTG GTGAAGAGTT TGCTATGATA
CTGCCTAATA CCTCCTGTGA CGGGGCGCTA CAGGTGGCGG AGCTGATGCG CAGCACCGTC
AGTGAGTTGC CGCTGGCATG GGGAGAGCAG GCTATTCCGC TCACCATCAG TATCGGGATC
TGCGCCGAAG TGATCGTCGA TGATCAGCAC ACTCAGCTGC TGGTCGACCA GGCAGACAAG
GCACTCTATC GTGCCAAGCA TGAGGGCCGA AATCGCGTTT GCGTCTATTC GCCCGAACTC
GAAGAATAA
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| Protein sequence | MSPFKLLLLL ITLSFPGFSQ GESLLAVNKN QSIELASWLY YVQDDSLTSL EQVSKLSSSH
WQRLTPEFNQ HLGVEPFWVK ISLYNATDTQ MRRYLKLGNP HLNRVSLYHL QRGKPTVHLE
IGDSYPFSQR PIINNDFLYR FELTPEVVHS FYIRVDTEGS ANLPISLLSP DHIVKATETQ
SLYQGFQLGA LMAIGLFSLF IALTSRSYSY SYYSGYVLSV TLLVATLHGL SFRYLWPNWP
VLQAVMIPIL IPIALTFVLM FSEKVLQLKY HNLKMLRLCR YSAATGLFLT LVTPFLSYSV
ALKVNIVAVL ITTSMLMLIA LLLSLRGHKL ARLYTLAWSG MLIGSFVTAM MYLGVIYLPI
MHQTPIMVGL SFEIVFMAAV LAIRYNDERK AKLKIQQEAL LQAQRIRQAR EEALQIEADS
NERLEQMVQE RTLELEIALR ELNEANQKLT EQNTVDSLTG VKNRAAFEKR LQAEGRLSRR
QQTPLAILMI DIDRFKAIND TYGHLAGDQA LKTIAQALKE KLRRPSDLVS RFGGEEFAMI
LPNTSCDGAL QVAELMRSTV SELPLAWGEQ AIPLTISIGI CAEVIVDDQH TQLLVDQADK
ALYRAKHEGR NRVCVYSPEL EE
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