| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3340 |
|---|
| Symbol | |
|---|
| ID | 4923095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3983615 |
|---|
| End bp | 3985672 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164952 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001095465 |
|---|
| Protein GI | 127514268 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.365151 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTGC GTCTCTCTTT CCTTACGCTC TCAATCGGCA CTGCCTTGCT GACTCTACCC
TTTGCTCAGG CTCAAGAAGC CGCCTTCGAG ATCATCGAAG TCCATGGTGC CCACCAGGGT
AGCTATACCT CGGTGACGCC CGAGGCCCAG GCACCCGTCA GTGACATCAG CGGTCTGCTC
ACCCAGCTCC CAGGCACGGC CGTCAACGGT AACGGCCCGC TGACCGGCAT CGCCCAGTAT
CGCGGCCTGT TCGGCGACAG AGTCAATACC CAGGTCAATG GTGTCTCCCT CGCCGGCGCA
GGCCCCAATG CCATGGACAC TCCGCTGAGC TATGCCAGCC TGATCAACAG TGAGCGCATC
GAGATGCACC GCGGCATAGC CCCCGTCTCG GCCGGCACTA ACACGGTAGG CGGCAGCATC
AAGGTGATCG AATCCCAGGC CAGCTTTAAC GATACTCAGG GTCGCATCGC CGCCCAGTAT
CAAGGCAATG GCGGCCAGAG CCATCTGGGG GCCAAGGTCA ATGTGGGTGG AAAGAACCAC
GCCCTGCTGG TCTATGGCGA CCTCATGCAT GGAGATGAGG ATATGAAATC CGGCGACGAT
CTTCGCCTCT CTCCCACCGG CTACGACAAG CAGATCATCG GCGGCCAATA CCGCTTAAAC
CTCAGCGACA AGGGGTTGGA CGATGAGTCC ATCGCCATCG GCTATCAACA TCTGGAAACC
ACAGAGGCGG GCACCCCGGC GTTGCCTATG GATATCGACT TCATCCGTAC CGACAGGGTG
AAACTCGAAG GTGAGCACAG GCTCGATACC TGGGATCTCA ACTGGCATCT GGCCTTTAGC
GATGCCAGAC ACGGCATGGA CAACTTCAGC GAACGTCAGA AGCCAGAGAG TGCCAACGCC
CGTTACAACA ACGCCGAGAG CCAGAGTTAT GATATGGCGC TGACACTGGG CAGAGATGCC
TGGCTGTTTG GCCTCGACAG TCAGCTGAGT GAACACAACT CGCTGATCAC AGATCCCACC
AAACCCATGT TCAGGGTCGA CAACTTCAAC AAGGTGCAGG ACGATACCTA TAGCGCCTTC
GCCCAATGGC AACAGGATAT CGACCAGTGG CATTGGCAGC TCGGCGCCAG GGTGAAACAC
TACCGCACCG ATGCCGATGA GGTCAGCCAC TCAATGGCTG GCGCCATGCC GGCCATCAAG
GTGTTGATGG ACAGATATAA CCAGGCGGAT CGCACCCAGG CGCAGACGGG GCTGGATCTG
GTGATCAACG GCCGTTATAG GGTCAATGAG GAGTTAACCT GGATACTCGG GCTGGCCCGC
AAACAGGACA GCGCCAGCTA TCAGCAGAGA TACCTGTGGA TCCCGATGCA ATCGACCGGT
GGACTCGCCG ACGGGCGCAC CTATGTGGGC AAGATGGATC TGGATCTGGA AACCGCCTAT
CAGCTGGAGC TGGGCGCCGA CTTCAACCGC CAGGGACTAA GCATCAGCCC ACGAGTCTTC
CTGCATCGCA TCGACGACTA TATTCAGGGG GTGAAGTCGA CCGATCCCGC GGTGATCATG
GCCGCCAACA TGATGGGCAG CCAAGATCCG ATGGAATTTG CCAATGTCGA TGCCCAGCTA
CTGGGGATGG ATATTAACGC CAGCTATGAG ATAACAGATC AGTGGCAGCT GGATCTCCTA
GCCAGCTATG TCAGCGGCGA GCGCCGCGAC ATCGACGACA ACCTCTACCG CATAGCACCG
CCAAAGGTAA ATTTGGGGCT CAACTTCAGA GAAGGCAACT GGTCTGCCCG CATCGAAGGG
GTGATGGTGG CGGCTCAGGA CAAGGTATCA GAGAGTCAAT CCGAGCAGGC CAGCGCGGGC
TACGGCCTGG TCAACCTGGT ACTGGCCTAC GACAGACAAA ACTGGCTGGT TAAGGCTGGG
GTCAACAACC TGTTCGATAT CGACTATGAA GATCATCTCG GCGGCTACAA CCGGGTGTTC
AATGCCGACC TAACGCCGGG GCAACGCATG CCGGGCACTG GCATGAATGC CTGGCTCACC
GGGGAGTATC GCTTCTAA
|
|---|
| Protein sequence | MALRLSFLTL SIGTALLTLP FAQAQEAAFE IIEVHGAHQG SYTSVTPEAQ APVSDISGLL
TQLPGTAVNG NGPLTGIAQY RGLFGDRVNT QVNGVSLAGA GPNAMDTPLS YASLINSERI
EMHRGIAPVS AGTNTVGGSI KVIESQASFN DTQGRIAAQY QGNGGQSHLG AKVNVGGKNH
ALLVYGDLMH GDEDMKSGDD LRLSPTGYDK QIIGGQYRLN LSDKGLDDES IAIGYQHLET
TEAGTPALPM DIDFIRTDRV KLEGEHRLDT WDLNWHLAFS DARHGMDNFS ERQKPESANA
RYNNAESQSY DMALTLGRDA WLFGLDSQLS EHNSLITDPT KPMFRVDNFN KVQDDTYSAF
AQWQQDIDQW HWQLGARVKH YRTDADEVSH SMAGAMPAIK VLMDRYNQAD RTQAQTGLDL
VINGRYRVNE ELTWILGLAR KQDSASYQQR YLWIPMQSTG GLADGRTYVG KMDLDLETAY
QLELGADFNR QGLSISPRVF LHRIDDYIQG VKSTDPAVIM AANMMGSQDP MEFANVDAQL
LGMDINASYE ITDQWQLDLL ASYVSGERRD IDDNLYRIAP PKVNLGLNFR EGNWSARIEG
VMVAAQDKVS ESQSEQASAG YGLVNLVLAY DRQNWLVKAG VNNLFDIDYE DHLGGYNRVF
NADLTPGQRM PGTGMNAWLT GEYRF
|
|---|
| |