Gene Shew_3336 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3336 
Symbol 
ID4923091 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3980421 
End bp3980921 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content60% 
IMG OID640164948 
ProductMarR family transcriptional regulator 
Protein accessionYP_001095461 
Protein GI127514264 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.470257 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTCAA ATCACCTCGA TGGCGTCGAT CGCCTAAGGG CCCAATGGGC CAAGGAGAAG 
CCGCAACTGG ATACCCTGCC TATGGCGATC CTCGGCCGCA TGATGCGTAT CTATAAACAT
CTGGAGACAG AGGTCAGTGC TTGTCATAAG CAGTTTGGCA TCAGCATGGG GGAGTTCGAT
GTGTTGGCGA CCCTGCGCCG CTCGGGAGAG CCCTATCGCC TGACGCCCTC GGATCTGCTG
GCGGCCATGA TGCTCACCTC GGGGGCCATG ACCAACCGCG TCGATGGTCT GGAGAAGAAG
GGGCTGGTCT CCCGCAGCCA TTGTCAGGAA GACAGGCGTA GCGTCAGCGT CGGCCTGACC
GAGGCGGGGC TCGCGTTGAT AGATGAGGCG ATCGAGGCCC ATGTGGCGGC TCAGCAGGCC
CTGACCAGTC GTCTGTCGCC CGATGAGAAA CAGCAGCTGG ATGGGCTGTT TAAACATTGG
CTGCAGGCAT TCGAGTCTTA A
 
Protein sequence
MNSNHLDGVD RLRAQWAKEK PQLDTLPMAI LGRMMRIYKH LETEVSACHK QFGISMGEFD 
VLATLRRSGE PYRLTPSDLL AAMMLTSGAM TNRVDGLEKK GLVSRSHCQE DRRSVSVGLT
EAGLALIDEA IEAHVAAQQA LTSRLSPDEK QQLDGLFKHW LQAFES