| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3335 |
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| Symbol | |
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| ID | 4923090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3978835 |
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| End bp | 3980013 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164947 |
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| Product | nitrite reductase, copper-containing |
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| Protein accession | YP_001095460 |
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| Protein GI | 127514263 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2132] Putative multicopper oxidases |
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| TIGRFAM ID | [TIGR02376] nitrite reductase, copper-containing |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGC AATCTTCTAC CCCTGCAGTG AATGTCGATC AGCAACGTCG TAGCTTCTTG
AGTGGTTCAG TCGGTCTGGG CCTGGTGGGC GCTGGTATGG CGGCCGGCTT GGTATCAAGC
AGTGCCTCGG CCACCACGCA GACCAAGTCA GACCGTATGG CCAACTATAA GGCGGAGCAG
CTTGCGCGCG TCACCTTAGA CCTGGTGCCA CCACCTATGG TGCCTAAGCA TGATCAGGTC
GCCAAGGGTA AGCCTAAGGT GGTGCAGGTG AAGCTGGTGG TAGAAGAGAA GCAGGTGGAG
CTGGAAAACG GCACCAAGGC TTGGGTCTGC GCCTTCAACG GTAGCGTGCC TGGCCCGCTC
ATCGTCTGTC ATCAACATGA CTTCGTCGAG CTGACTCTGG TGAACCCTGC GACCAACGCC
CTGGCCCACA ACATCGACCT GCATGCGGCC ACCGGCGCCC TGGGCGGCGG CGAGCTGACT
CTGGTTTCTC CCGGCCAGGA GGTGACCTTC CGCTTCAAGG CGACCAAGGC CGGCACCTTC
GTGTATCACT GTGCGCCGGG CGGGGTGATG ATCCCTTGGC ACGTGGCCAT GGGCATGCAT
GGCGCCATCA TGGTGCTGCC CCGTGACGGT CTGAAAGATG CCGAAGGCAA GCCAGTTAAA
TATGACAAGG CCTACTACAT AGGCGAAGCC GACTTCTATG TGCCAAAGGA TGCCAACGGC
AAATACAAGG CCTATGACAC TGTGATGGGC AGCATGAGTG AGGTGCTTGA GGTGATGAAG
ACACTTACTC CATCTCATGT GGTGTTCAAC GGCGCCGTAG GTGCCCTGAC AGGCAAGAAC
GCCATGACCG CCAAGGTGGG TGAGTCTGTG CTCTTCGTAC ACTCTCAGGC GAACCGCGAC
ACCCGTCCGC ACATCATCGG CGGACACGGT GACTATGTCT GGCCAGCGGG TTCATTTACC
GATGCACCGC AGACCAATCT GGAAACCTGG ATGGTCGCCG GGGGCAGTGC CTGCGCCGCC
CTATACACCT TCCGCCAGCC AGGTCTCTAT GCCTATGTGA ACCACAACCT GATCGAGGCG
ATCATCAAGG GCGCCGCAGC TCACGTGAAG GTCGACGGCG AGTGGGATGA CAACCTGATG
GTGCAGCTCA AGAAGCCATC TAGCATAGCC ACGGCCTAA
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| Protein sequence | MEKQSSTPAV NVDQQRRSFL SGSVGLGLVG AGMAAGLVSS SASATTQTKS DRMANYKAEQ
LARVTLDLVP PPMVPKHDQV AKGKPKVVQV KLVVEEKQVE LENGTKAWVC AFNGSVPGPL
IVCHQHDFVE LTLVNPATNA LAHNIDLHAA TGALGGGELT LVSPGQEVTF RFKATKAGTF
VYHCAPGGVM IPWHVAMGMH GAIMVLPRDG LKDAEGKPVK YDKAYYIGEA DFYVPKDANG
KYKAYDTVMG SMSEVLEVMK TLTPSHVVFN GAVGALTGKN AMTAKVGESV LFVHSQANRD
TRPHIIGGHG DYVWPAGSFT DAPQTNLETW MVAGGSACAA LYTFRQPGLY AYVNHNLIEA
IIKGAAAHVK VDGEWDDNLM VQLKKPSSIA TA
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