| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3330 |
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| Symbol | |
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| ID | 4924040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3974683 |
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| End bp | 3975888 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164942 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001095455 |
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| Protein GI | 127514258 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTG ACCCCATTGC CGAGCTCTTG GTGCTATTTA TCTGCCTGCT CGCCAGTACC
TCTACCCTTG CCTGGGGCCT GATGGCCTAC CCGCTGCGCA TCGCTCCCCG CGCCAGCACC
TATTTCTCTC TTGCCAACCT ATTGATCTTA ACGGGAGTGC TCCTCACCAC GCTCAGGGAC
CAGACGCCGA GCTATCTCTA CTGGTTGGGG GCAGACATGT TGCTATTACT CGGTTTCGTG
CTGCTTCGTA GCGGCACCCA ACGCCTGTTT CGCCTGTCAA GCAGCATCAA AATAGATCTC
GCTTTACTGC TCCTGACGGG GCTCTCGATG TTAACTCAGC CACCCAGCAT AGCAGCCAGC
GATACCCTGG GCATCTTCTT CTCCTTCATG GCCGCCAGCA CCTTCTTGCT GATGGCCAAG
GACAATCTGG TCGCCCTGGA ACACACGGTC AAACGCCCCA TCGCCGTGAT CCTCTTGAGC
CCCATCGCTC TGATGGGGGT CATTTTTGGC CTCAGGGCGC TGTTGCTGCT CATCGAGCCT
GCTCTAAAAT CCCACCTGGC CAGCATTCAG AGTGCCGACG CCATCCCCAT GTTGTGGCTG
TATGTGGTCA TGACTCTGTG GATCAACGTG ATCATGATGG GCAACGCCCT CACCCGTCTG
GTGCAGAAGA TGCGCCAACA GGCAGACAGG GACTATCTCA CTGGGCTATG GAACCGGCGC
GCCATGCAGC AGCAACTGGA GCAGCTGCAT CAGCGTTGGC TCAGGGATGG ACAGGCCTAT
AGCCTGATCC TGTTCGATCT GGATTTCTTC AAACAGATCA ATGACAAGTT TGGTCACTCT
GCCGGGGACG CCGTGCTCGT TAAGACGGCG CAGCAGATAG GTAAGGTCAC CCGCGCCATG
GATATCTTCT GCCGCCTCGG CGGCGAGGAG TTTCTGCTGG TGTTACCCGG CACTGATGGC
GAGGTGGCGG AGATCATCGC CCAGAAATTG CAGCAGGCCC TGAGACAATC CAGCCTCAAC
TGGCAGGGCA GCCTGATCCC CATCAGCGCC AGCTTCGGCA TAGTCACTAC AGCAACAGGC
GATACACCGG ACAGCCTATT GGCGCTTGCC GACAAGGCGA TGTACCGCGC CAAGGAGACC
GGCAGGGATC GCTGCTGCAC GGCAGAGCGA AGGCTAGAGC AGGCTCAGGC TACACCATCT
CAATAG
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| Protein sequence | MNIDPIAELL VLFICLLAST STLAWGLMAY PLRIAPRAST YFSLANLLIL TGVLLTTLRD
QTPSYLYWLG ADMLLLLGFV LLRSGTQRLF RLSSSIKIDL ALLLLTGLSM LTQPPSIAAS
DTLGIFFSFM AASTFLLMAK DNLVALEHTV KRPIAVILLS PIALMGVIFG LRALLLLIEP
ALKSHLASIQ SADAIPMLWL YVVMTLWINV IMMGNALTRL VQKMRQQADR DYLTGLWNRR
AMQQQLEQLH QRWLRDGQAY SLILFDLDFF KQINDKFGHS AGDAVLVKTA QQIGKVTRAM
DIFCRLGGEE FLLVLPGTDG EVAEIIAQKL QQALRQSSLN WQGSLIPISA SFGIVTTATG
DTPDSLLALA DKAMYRAKET GRDRCCTAER RLEQAQATPS Q
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