| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3313 |
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| Symbol | |
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| ID | 4923951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3953401 |
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| End bp | 3953844 |
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| Gene Length | 444 bp |
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| Protein Length | 147 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640164925 |
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| Product | PTS IIA-like nitrogen-regulatory protein PtsN |
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| Protein accession | YP_001095438 |
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| Protein GI | 127514241 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
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| TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.13325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.972108 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAACTGA GTACCATCCT GCGGCCGGAG TGCACCACCT GCGCCACTCC GGGCAGTAAG
AAAAAGGTAC TGGAGCTTAT CAGCGACTTA GCCGCTGTCC AGTACCCCAC CCTCTCCTCT
CAAGAAATAT TTGAAAGCCT TCTGGCTCGA GAGAAAATGG GCAGCACAGG TATAGGCAAT
GGTATCGCGA TTCCTCACGG ACGGCTGACT AACATAGATC AACCCGTGGC CGTACTGGTG
AAATGTGCTG AACCAATCGC ATTCGATGCC ATTGACAATC AGCCCGTCGA TATCCTTTTT
GCGTTATTGG TGCCCGCAGA TCAATGCGAG CAACATCTTA GCACCCTGGC CGCTATGGCC
GAGAAGCTCA ATGATAAGGC GATCATGAAG CAGCTAAGAA AGACCCAAGA TGAATCCGAA
CTCTATCAGG TGATCACCCA ATGA
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| Protein sequence | MELSTILRPE CTTCATPGSK KKVLELISDL AAVQYPTLSS QEIFESLLAR EKMGSTGIGN
GIAIPHGRLT NIDQPVAVLV KCAEPIAFDA IDNQPVDILF ALLVPADQCE QHLSTLAAMA
EKLNDKAIMK QLRKTQDESE LYQVITQ
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