| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3311 |
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| Symbol | |
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| ID | 4923949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3951593 |
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| End bp | 3953080 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164923 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001095436 |
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| Protein GI | 127514239 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000123268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.857463 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGCGT CACTTCAGCT CAAAATGGGT CAGCATCTCA CCATGACGCC CCAGCTACAA
CAGGCCATAC GTCTGTTGCA GTTGTCGTCA TTAGAGTTGC AGCAGGAGAT CCAGCAGGCA
TTAGAATCCA ACCCGCTACT GGAGTTGGAT GAAGAGCAGG AGAGCGCCAG CATCGAGCTG
CAAGACGATG GCGTCACCGA CAGCTTCGAC AACAAGTACG ACGACAAGAT AGAGCTGGAT
TCGAGCCAGG ATAACTCAGG GGTCGAGACC TCTGATGCCC TGACTCAAGA CTCTATGCCA
GACGAGCTGC CGGTGGATAC CACCTGGGAT GAGGTCTACA CCGCCTCACC AAACTCAAGC
TCGGGCGCCA TGCGCGACGA CGACATGCCT TTTCAGGGCG AGACCAGCGA AGGTCTGTAT
GAACACCTGG AATGGCAGAA GAACCTGACC CCTTTTTCCG ATAACGACCT GGCCATCGCT
ACCGCCATCA TCGACGCTAT CGACGAGCGC GGTTACCTGA CCCAGACCTG CGAAGATATT
CTCGAGGCCA TGGGCGACCC AGAGATCGAA CTCGACGAGG TCGAAGCGGT GCTCAAGCGA
GTACAACACT TCGACCCTAT TGGCGTGGCG GCCCGTGATC TCAGCGAATG TCTGACCATT
CAGCTGGCCC AATACAGCGA CGATACCCCG CACATCGCCA ACGCCCGCAT GCTGATCAAG
GAGCACCTGG ATCTCATCGC CGGACGCGAC TTCCGTCTGC TGATGCGCAA AACCAAGCTC
AAGGAAGATG AGCTGAGGGA TGCCATCGCC CTTATTCAGA CCCTGAATCC CCGTCCCGGT
CTCGCCATCA CCGCCAGCCG CGACGAGTAC GTGATCCCGG ATGTGACCGT CACCAAGAAG
AAGGGACGCT GGGTAGTCGA GCTCAACCCA GACAGCATGC CTAAGATCAA CGTCAACCAG
CAGTATGCCG CCATGGCCCG CAGCACTAAG AGTCAGGCGG ATGGCCAGTT TATTCGCGGC
CACCTGCAGG AAGCCAAATG GTTCCTCAAG AGCCTGGAGA GTCGCAACGA GACCCTGCTC
AAGGTGACCA ACTGTATCGT CGACTTCCAG CAAGGCTTCT TCGAATTTGG CGAAGAGGCG
ATGAAGCCCA TGGTACTGAA CGACATCGCC GAGGCGGTGG AGATGCATGA ATCCACCATC
TCACGTGTGA CCACGCAAAA ATATATGCAT ACCCCGAGAG GGATCTTCGA GCTTAAATAC
TTCTTCTCCA GTCACGTCGG TACCGACGAT GGCGGAGAGT GCTCTTCAAC AGCAATACGT
GCCTTCATTA AGAAGCTGGT TGCTGCGGAA AACCAGAAAA AGCCATTGAG CGACAGCAAG
ATGGCTCAAC TCTTGGCCGA ACAGGGGATT AAGGTGGCTA GACGCACCAT TGCCAAGTAT
CGCGAGGCAA TGCTTATACC GCCCTCGAAT CAGCGCAAGA GCTTATAA
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| Protein sequence | MKASLQLKMG QHLTMTPQLQ QAIRLLQLSS LELQQEIQQA LESNPLLELD EEQESASIEL
QDDGVTDSFD NKYDDKIELD SSQDNSGVET SDALTQDSMP DELPVDTTWD EVYTASPNSS
SGAMRDDDMP FQGETSEGLY EHLEWQKNLT PFSDNDLAIA TAIIDAIDER GYLTQTCEDI
LEAMGDPEIE LDEVEAVLKR VQHFDPIGVA ARDLSECLTI QLAQYSDDTP HIANARMLIK
EHLDLIAGRD FRLLMRKTKL KEDELRDAIA LIQTLNPRPG LAITASRDEY VIPDVTVTKK
KGRWVVELNP DSMPKINVNQ QYAAMARSTK SQADGQFIRG HLQEAKWFLK SLESRNETLL
KVTNCIVDFQ QGFFEFGEEA MKPMVLNDIA EAVEMHESTI SRVTTQKYMH TPRGIFELKY
FFSSHVGTDD GGECSSTAIR AFIKKLVAAE NQKKPLSDSK MAQLLAEQGI KVARRTIAKY
REAMLIPPSN QRKSL
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