| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3309 |
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| Symbol | |
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| ID | 4923947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3950185 |
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| End bp | 3950730 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164921 |
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| Product | OstA family protein |
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| Protein accession | YP_001095434 |
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| Protein GI | 127514237 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000684229 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.786006 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACTAA ATAGCCTTAT TCTTGCGGGC CTGCTGCCCC TGGTCAGTGT TGGCGCCTAT
GCCAAGGTGA ACGACCTGCT GCAAGAGGTT AAGATCTCTG CCGCCAGCCA GGAAGCCGAC
ATTAAGAACA ACCAGATCAT CTTCCACGGT CCGGTCGAGG TCACCCAAGG CTCAATCAAG
ATATTGGCCA GTGAACTACG CGCCTTCAGC AAAGAGAAGA ACAGCGGCAA GATACTGATC
GCCACCGGCA ACCCGGCCAC CTACTCGCAG GTGATGGAAG ATGGCCGTCC CGCCTCGGCC
AGCGCCAAGG AGATCCGCTA CGAGCTTTCC AGCCGCACCC TGACGCTCAT TGGCGACGCC
ACCCTGGAAC AGGAAGGCAG CCAGGTCACG GGGTCGCAGA TCCGCTACAA CATAGAACAG
CAACAGCTGA TCGCCGAGAG CACAGGCAAA GACAGAGTGA TCACTATCAT TCAGCCTGAG
AACTATCAGG AACAGATCCA GCCAGAGCAG AAGCCCGAGA AGAAACCAGA ACAGGAAAAA
CAATGA
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| Protein sequence | MKLNSLILAG LLPLVSVGAY AKVNDLLQEV KISAASQEAD IKNNQIIFHG PVEVTQGSIK
ILASELRAFS KEKNSGKILI ATGNPATYSQ VMEDGRPASA SAKEIRYELS SRTLTLIGDA
TLEQEGSQVT GSQIRYNIEQ QQLIAESTGK DRVITIIQPE NYQEQIQPEQ KPEKKPEQEK
Q
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