Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3305 |
Symbol | |
ID | 4923943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3947121 |
End bp | 3948080 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164917 |
Product | CaCA family Na(+)/Ca(+) antiporter |
Protein accession | YP_001095430 |
Protein GI | 127514233 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0530] Ca2+/Na+ antiporter |
TIGRFAM ID | [TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.568121 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTATTTA ATATTTTCTT ACTGATTGCT GGTTTGGGTG CCCTTGTCTG GAGTGCCGAC AAATTTGTCT TCGGCGCCGC GGCATTCGCC CGTAATCTCG GCCTGCCGCC CATGTTAATT GGCCTCACCA TAGTCGCCAT GGGCAGCTCG GCCCCGGAAA TGTTTGTGGC AGCCACCGCC TCCCTCGAAG GCATGACAGA CACCGCCATA GGGAATGTCC TGGGCTCCAA CGTCGCCAAT ATCACGCTGA TCCTGGGGAT CACCGCCCTG TTAGGCGCAA TCTCGGTAAG CTCACAGACA CTCAAGCGAG AAATCCCTAT GATGCTAGGC GCCACGGCGC TGGCGGGCTA TTTCCTTCAC GATGGCCAGC TGACCCGCGT CGAGGGACTG GTGCTGATGG CACTCTTCTT CGCCCTCATG GGGTATCTGA TCTGGCATGC GATCGTCAAC AAGGAGAAAG ATCCCCTGAT CGACGAGGCC GAGAGCGAGG TGCCTAAAGA TGTGCCTACG CCTAAGGCGA TCCTCTGGCT GGTGATTGGC TTAGTGTTGC TGCCCCTGTC TGCCGACTGG ATGGTGCAGG GCGCCGTGGG TATCGCCAAG GCCTTCCATA TGTCAGACTT AGTCATAGGC CTGACCATTA TCGCCGTCGG CACCAGCCTG CCTGAGTTGG CGGCCTGTGT GGCCGGCGTG CTGAAGAAAG AGGACGACCT TGCCATAGGC AACGTGGTCG GCTCGAACCT GTTTAACATT CTTGCGGTAC TGGCGCTACC CGCCCTTATC GCCCCAGGCG CAGTAGATGC CGCCGCCAGC AGTCGCGACT TTTACATGGT GATGGCAACC AGCGTTGCCC TGGCCATACT GATTTTATTA ACCGGCAAGG CCCGCCAACT ACGCCCCTGG CATGGCGGTG TGTTATTAGC GACTTTTATC GCGTACCAAG TCACACTTTT CCTATCCTAA
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Protein sequence | MLFNIFLLIA GLGALVWSAD KFVFGAAAFA RNLGLPPMLI GLTIVAMGSS APEMFVAATA SLEGMTDTAI GNVLGSNVAN ITLILGITAL LGAISVSSQT LKREIPMMLG ATALAGYFLH DGQLTRVEGL VLMALFFALM GYLIWHAIVN KEKDPLIDEA ESEVPKDVPT PKAILWLVIG LVLLPLSADW MVQGAVGIAK AFHMSDLVIG LTIIAVGTSL PELAACVAGV LKKEDDLAIG NVVGSNLFNI LAVLALPALI APGAVDAAAS SRDFYMVMAT SVALAILILL TGKARQLRPW HGGVLLATFI AYQVTLFLS
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