| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3301 |
|---|
| Symbol | |
|---|
| ID | 4920802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3944095 |
|---|
| End bp | 3944748 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640164913 |
|---|
| Product | toluene tolerance family protein |
|---|
| Protein accession | YP_001095426 |
|---|
| Protein GI | 127514229 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2854] ABC-type transport system involved in resistance to organic solvents, auxiliary component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.137014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGT TGTTGCAAAT ACTCTTCTCC TCCATGTTAT TGCTGATCGG CGGTGCCGTT
AGCGCCGAGG AGATCTCGGT CAATACCAAG GACCCCTATG CCATGGTGGA ATCTGTGGCC
AACAAGACTT TTGCCCGTTT TCATCAGGAT ATTGCCACAA TTCAGGCCAA TCCAGACCAT
CTTAAGGTGA TAGTCTCTGA CGAGTTGATG CCTTATATCG ATTATAAGTA TGCCTCTTAT
AAGGTGATGG GGCCCTACCT GCGTCAGAGT ACGCCGGATC AGCGCGAGCG TTTCGCCGAG
GCCTTTAAGA CTTATCTGAT CGCGACTTAT GCCCAGGCAT TTACCGAGTA TACCGATCAG
CAGGTGGAGT TTGCCCCGGC TAAGGGGTTC GACGGTGAGA AGATGGTAGA TGTCAACGTA
CAGATCATCG AGCAGGGCCG TCCGCCTATC AAGCTGATCT TCAGGGTGCG TCGTTTGAAG
GACGATACCT GGAAGGCGTT CGACTTGGTG GCCGAAGGGG TGAGTCTGCT CTCCTCTAAG
AGCGCGGAGA TCACTAACCT GATCCGCCAA AACGGCATAG ATGCGGTAAT AAAAGAGCTG
GAGACCCACA CAGATAACCA TATCAGCTTG GTTAACAAGG GGACTAAGCT ATAA
|
|---|
| Protein sequence | MKQLLQILFS SMLLLIGGAV SAEEISVNTK DPYAMVESVA NKTFARFHQD IATIQANPDH
LKVIVSDELM PYIDYKYASY KVMGPYLRQS TPDQRERFAE AFKTYLIATY AQAFTEYTDQ
QVEFAPAKGF DGEKMVDVNV QIIEQGRPPI KLIFRVRRLK DDTWKAFDLV AEGVSLLSSK
SAEITNLIRQ NGIDAVIKEL ETHTDNHISL VNKGTKL
|
|---|
| |