| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3297 |
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| Symbol | |
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| ID | 4920798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3940751 |
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| End bp | 3941830 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164909 |
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| Product | periplasmic serine protease DegS |
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| Protein accession | YP_001095422 |
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| Protein GI | 127514225 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00219281 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0321513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTTA AAGACACGGT AATTTACATC GCGAAAGCAG TTTTTTTCGG CCTCATCATG
GCCGCCGTCT TTCTGGTCAT CACCCCATGG ATAACAGGCA CTGCCAATCA CGGTAACTTC
TTCCAGAGCC GGGGACAAAA CGGGATAGAA CTCTCCTTCT CTCAGGCGGT GCGCCGCGCG
GCACCCGCTG TGGTCAACAT CTATAGTCTG AGCATAGATC AGAGCCGCCC GCTCAACTCG
GGCTCCCTGC AAGGGCTGGG TTCAGGCGTG ATCATGAGCA AAGAGGGCTA CATACTCACC
AACTATCACG TGGTTAAGAA GGCGGACGAG ATAGTGGTCG CCCTGCAAGA TGGCCGCAAG
TTTACCTCAG AGGTGGTGGG GTCAGACTCT GTCACCGACC TGGCGGTGCT TAAGATAGAG
GGCGATACCC TGCCCGTGGT GCCCATCAAC TTAGACGTGC CGGCACAGGT GGGCGACGTG
GTGCTAGCCA TAGGCAACCC CTATAACCTG GGGCAGACCA TCACCCAAGG GATCATCAGC
GCCACCGGCC GTAACGGCCT GAGTTCTGGT TATCTGGACT TCCTGCAGAC AGATGCCGCC
ATCAACGCGG GCAACTCGGG GGGCGCGCTT ATCGACACCA GCGGCCGCCT GATCGGCATC
AACACCGCCG CCTTCCAGAT TGGTGGCGAA GGTGGTGGCC ATGGCATTAA CTTCGCCATC
CCCATCAAGC TGGCCCACAG CATCATGGGT AAGCTGATCA AAGATGGCCG GGTGATCCGT
GGTGCACTGG GGATCACAGG CGAGGCGATC AACCCAGTGA TGGCGCAGAT CCTTAACCTG
CCGGATCTGA CCGGTGTCAT GGTCACAGGT GTAGATCATC AGGGACCGGC CGCCCAGGCT
AAGCTGAGAC CCAGAGACGT TATCACTAAG TTTAACGACG AAACCGTTCC CGGCGTCGAG
ATGCTGATGG ATAGGATTGC CGAGACGCCA CCCGGCACTC AGGTGACCAT GACCATTATC
CGCAGCGGCA AGTATTATGA GGTACCTGTC ACCATAGGGG AAAACCTTGG CTCTGAGTAA
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| Protein sequence | MTLKDTVIYI AKAVFFGLIM AAVFLVITPW ITGTANHGNF FQSRGQNGIE LSFSQAVRRA
APAVVNIYSL SIDQSRPLNS GSLQGLGSGV IMSKEGYILT NYHVVKKADE IVVALQDGRK
FTSEVVGSDS VTDLAVLKIE GDTLPVVPIN LDVPAQVGDV VLAIGNPYNL GQTITQGIIS
ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTSGRLIGI NTAAFQIGGE GGGHGINFAI
PIKLAHSIMG KLIKDGRVIR GALGITGEAI NPVMAQILNL PDLTGVMVTG VDHQGPAAQA
KLRPRDVITK FNDETVPGVE MLMDRIAETP PGTQVTMTII RSGKYYEVPV TIGENLGSE
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