| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3296 |
|---|
| Symbol | |
|---|
| ID | 4920797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3939261 |
|---|
| End bp | 3940613 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164908 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_001095421 |
|---|
| Protein GI | 127514224 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0128319 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00139389 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGA AATTATCACT ACTTTCCGCC GCACTGCTCG GCGCGAGCCT GATGGTTATG
CCTGCCGTTT CTCAAGCCGC CATTCCACTG GCCGTCGAGG GGCAAGCGCT GCCCAGCTTG
GCCCCCATGC TGGAGAAAAC CACCCCAGCC GTGGTTGCCG TCGCCGTCTC TGGCACCCAT
GTCTCTAAGC AGCGTCTGCC CGATGCGTTC CGCTACTTCT TCGGCCCTAA TGCTCCCAGA
GAACAGGTGC AAGAGCGTCC CTTCAAGGGT CTGGGTTCGG GCGTCATCAT AGATGCTAAG
AAAGGCTATA TCGTCACCAA CAACCATGTG ATCGAAGGCG CCGACGAGAT CTTGATTGGC
CTGCATGACG GCCGTGAGAT CGAGGCCAAG CTTATCGGTA CCGATGCCGA GTCAGACGTG
GCCCTGCTAC AGATAGAAGC CAAGAACCTG GTGGCCCTCA AGCGCGCCGA CTCGGATGAA
CTCAAGGTGG GCGACTTTGC CGTGGCTATC GGTAACCCCT TCGGTTTAGG CCAAACGGTC
ACCTCGGGTA TCGTCAGCGC CATGGGCCGC AGCGGCCTAG GTATCGAGAT GCTGGAGAAC
TTCATTCAGA CAGACGCCGC CATCAACAGC GGTAACTCGG GCGGCGCCCT GGTGAATCTC
AACGGTGAGC TGATCGGCAT CAACACCGCC ATCGTCGCTC CGGGCGGCGG CAACGTGGGT
ATCGGCTTCG CGATTCCCGC CAACATGGTC AACAACCTAG TGGATCAACT GATCGAACAC
GGCGAGGTGC GCCGCGGCGT ACTAGGTGTC AGTGGTCGTG ACTTAGACAG CGAGCTGGCC
CAGGGCTTCG GCTTGGATTC GCAGCACGGC GGCTTCGTCA ATGAAGTCAT GCCTGACAGC
GCCGCCGACA AGGCGGGCAT CAAGGCTGGG GATATCATAG TCAGCGTCAA CGATAAGCCG
ATCAAATCCT TCCAGGAGCT GAGAGCCAAG ATAGGCACCA TGGGCGCCGG CGCCAAGGTG
AAACTCGGTC TTATCCGCGA CGGCGATGAG AAGACGGTCA CCGCAGTATT AGGCGAGGCG
AGCCAGCAGA CAGAAACCGC GGCGGGCGCC GTACATCCAA TGCTGGCGGG TGCCACCCTG
GAGAACAATA AGAAGGGGGT CGAGATCACC GAGATCGCCC AAGGTTCTCC GGCAGCGGCC
AGTGGCCTGC TTAAGGGCGA TATCATAGTC GGGGTCAACC GTACCCGTAT CGAAGATCTT
AAGGAGCTCA AGGCGGAGCT GAAGGAGCAA CACGGCGCCG TGGCCCTGAA ACTGCTGCGC
GGTGACAACA GCCTCTATCT GGTTCTGAGA TAA
|
|---|
| Protein sequence | MKTKLSLLSA ALLGASLMVM PAVSQAAIPL AVEGQALPSL APMLEKTTPA VVAVAVSGTH
VSKQRLPDAF RYFFGPNAPR EQVQERPFKG LGSGVIIDAK KGYIVTNNHV IEGADEILIG
LHDGREIEAK LIGTDAESDV ALLQIEAKNL VALKRADSDE LKVGDFAVAI GNPFGLGQTV
TSGIVSAMGR SGLGIEMLEN FIQTDAAINS GNSGGALVNL NGELIGINTA IVAPGGGNVG
IGFAIPANMV NNLVDQLIEH GEVRRGVLGV SGRDLDSELA QGFGLDSQHG GFVNEVMPDS
AADKAGIKAG DIIVSVNDKP IKSFQELRAK IGTMGAGAKV KLGLIRDGDE KTVTAVLGEA
SQQTETAAGA VHPMLAGATL ENNKKGVEIT EIAQGSPAAA SGLLKGDIIV GVNRTRIEDL
KELKAELKEQ HGAVALKLLR GDNSLYLVLR
|
|---|
| |