| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3294 |
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| Symbol | rplM |
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| ID | 4920795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3937139 |
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| End bp | 3937570 |
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| Gene Length | 432 bp |
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| Protein Length | 143 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640164906 |
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| Product | 50S ribosomal protein L13 |
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| Protein accession | YP_001095419 |
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| Protein GI | 127514222 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0102] Ribosomal protein L13 |
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| TIGRFAM ID | [TIGR01066] ribosomal protein L13, bacterial type |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000182384 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00115677 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAGACTA CATATACTGC TACACCAGAA ACAGTGACGC GCGAATGGTT CGTTGTTGAC
GCTGAAGGTA AAACTTTAGG TCGTATCGCG ACTGAAATCG CTCGTCGTCT ACGTGGCAAG
CATAAGGCAG AATACACTCC TCACGTTGAT ACTGGCGATT ACATCATCGT TATCAATGCT
GAGAAAGTAA CTGTAACTGG TAACAAAGCA GCAGCTAAGA CTTACTACTC TCATTCTGGT
TTCCCAGGTG GTATCAAGCA GATTACTTTC GATAAGCTGC AAGATCATAA GCCAGAAATG
ATTATCGAGA AAGCAGTAAA AGGTATGTTG CCAAAAGGTC CTCTAGGACG TGCCATGTAC
CGTAAACTGA AAGTTTACGC TGGCGCAGAG CACAACCACG CTGCACAACA ACCACAAGTT
CTTGATATCT AA
|
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| Protein sequence | MKTTYTATPE TVTREWFVVD AEGKTLGRIA TEIARRLRGK HKAEYTPHVD TGDYIIVINA
EKVTVTGNKA AAKTYYSHSG FPGGIKQITF DKLQDHKPEM IIEKAVKGML PKGPLGRAMY
RKLKVYAGAE HNHAAQQPQV LDI
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