Gene Shew_3290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3290 
Symbol 
ID4920791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3934127 
End bp3934813 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content55% 
IMG OID640164902 
ProductSel1 domain-containing protein 
Protein accessionYP_001095415 
Protein GI127514218 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000129217 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00111993 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGATGACGA GATTAGTATG CGTTATTTTG CTGGCCTGTC TATCGACGCT GGCCCAAACC 
CAAGTACAAG CCGAGGCACA AGCCGTTAAG GCTAGCGATA ACAAGTCTGC CGATAAGAAG
GCGGAGCTCA AGGCGGTCAA CATCTACAGC CAAGAGCAGC TTGTCGAGAT GATCCGCGAC
AAGTCTTACC TGACCCGCGT GAAGGGAGAC GACTGTCAGC TGGTGCAAGA TATCGAGGCC
CGCGCCGAGG TATTGAAGCA GCCGCTGTAC CAATATTTAT GGGCGGAGAT GCTGAACTAT
GGCATCTGCG TCAAGGCCAA TCCGCCACGG GGGATCTCCA TGCTACGCGA CGCCGCAGAG
CAGGGGAGCG CCGAGGCCAT GGTCAGGATC GCCGAATATT ACCATGATGG TAAGTTCGTG
ATCCAAGATA AGGAGCGTGC GGTGCAATAT ACACTGCCCG CTGCCGCCAG TGGCGATCTG
CCTGCGCGCA TGATGCTGGT CAGATTGTTT GGCGAAGGCT ATGGTAGCCC CAGAGACTAT
GAGATGGGTT ACCACTGGCT ATACAACGAT GTATTTAGTG ATGAGGCGAC CAAACAGGAA
GCCCTGAAAT TATTGATGGT GCTGGAAGCA AAGATGCCCG CAAGTGCAGT TGAGAGGGCT
AAGCAGGCGC ACCTGAGATC CCGGTAA
 
Protein sequence
MMTRLVCVIL LACLSTLAQT QVQAEAQAVK ASDNKSADKK AELKAVNIYS QEQLVEMIRD 
KSYLTRVKGD DCQLVQDIEA RAEVLKQPLY QYLWAEMLNY GICVKANPPR GISMLRDAAE
QGSAEAMVRI AEYYHDGKFV IQDKERAVQY TLPAAASGDL PARMMLVRLF GEGYGSPRDY
EMGYHWLYND VFSDEATKQE ALKLLMVLEA KMPASAVERA KQAHLRSR