Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3290 |
Symbol | |
ID | 4920791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3934127 |
End bp | 3934813 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640164902 |
Product | Sel1 domain-containing protein |
Protein accession | YP_001095415 |
Protein GI | 127514218 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000129217 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00111993 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGATGACGA GATTAGTATG CGTTATTTTG CTGGCCTGTC TATCGACGCT GGCCCAAACC CAAGTACAAG CCGAGGCACA AGCCGTTAAG GCTAGCGATA ACAAGTCTGC CGATAAGAAG GCGGAGCTCA AGGCGGTCAA CATCTACAGC CAAGAGCAGC TTGTCGAGAT GATCCGCGAC AAGTCTTACC TGACCCGCGT GAAGGGAGAC GACTGTCAGC TGGTGCAAGA TATCGAGGCC CGCGCCGAGG TATTGAAGCA GCCGCTGTAC CAATATTTAT GGGCGGAGAT GCTGAACTAT GGCATCTGCG TCAAGGCCAA TCCGCCACGG GGGATCTCCA TGCTACGCGA CGCCGCAGAG CAGGGGAGCG CCGAGGCCAT GGTCAGGATC GCCGAATATT ACCATGATGG TAAGTTCGTG ATCCAAGATA AGGAGCGTGC GGTGCAATAT ACACTGCCCG CTGCCGCCAG TGGCGATCTG CCTGCGCGCA TGATGCTGGT CAGATTGTTT GGCGAAGGCT ATGGTAGCCC CAGAGACTAT GAGATGGGTT ACCACTGGCT ATACAACGAT GTATTTAGTG ATGAGGCGAC CAAACAGGAA GCCCTGAAAT TATTGATGGT GCTGGAAGCA AAGATGCCCG CAAGTGCAGT TGAGAGGGCT AAGCAGGCGC ACCTGAGATC CCGGTAA
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Protein sequence | MMTRLVCVIL LACLSTLAQT QVQAEAQAVK ASDNKSADKK AELKAVNIYS QEQLVEMIRD KSYLTRVKGD DCQLVQDIEA RAEVLKQPLY QYLWAEMLNY GICVKANPPR GISMLRDAAE QGSAEAMVRI AEYYHDGKFV IQDKERAVQY TLPAAASGDL PARMMLVRLF GEGYGSPRDY EMGYHWLYND VFSDEATKQE ALKLLMVLEA KMPASAVERA KQAHLRSR
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