| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3289 |
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| Symbol | |
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| ID | 4921125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3931595 |
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| End bp | 3934069 |
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| Gene Length | 2475 bp |
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| Protein Length | 824 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164901 |
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| Product | ribonuclease R |
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| Protein accession | YP_001095414 |
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| Protein GI | 127514217 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.457006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0018456 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAG ATCCGCATTT AAAGCGTGAA CAAGAGAAGT ACGACAACCC CATTCCTAGT
CGTGAGTATA TTTTAGATTA CTTACGCTCA CAGCAATCAC CCCTCAATCG CGAGAAAATC
GCCCAGGCGC TGAACATAAG CGACGAAGAG CAGCTCGAAG CCTTGCGCCG ACGCCTCAGA
GCCATGGAGC GAGACGGCGA GCTGGTCTTT ACCCGTGGTC AGGCCTATGG TCTGCCCGAG
CGTATGGATC TGCTCAGCGG CACCGTTCTG GGGCACAAGG ATGGCTTCGG CTTCCTCAAG
CTCGATGAGG GCGGCGACGA CCTCTTCATC AACAACCGTG ACATGCTGAT GTATTTTCAC
GGCGACAAGG TATTGGCGCA GAAGGCAGGC GTCGATCGCA AGGGGCGCCG CGAGGCCCGC
ATCGTCCGTC TGACCCATGA GCGCACCGCG CCTCTGGTGG GGCGTTTCCA TCTGGATTCC
GGCATGGCCT TTGTCATCAC CGACGACAAG CGCATCACCC AGGAGATCCT GATCCCCGAC
GACGATCGCA ATGGCGCTCG TCAGGGCGAT GTGGTGGTGA TCGAGCTGAC ACGCCGCCCA
GGCCGCTACA TGAAGGCGGC GGGTAAGGTC ACCGAGGTAC TGGGTAAAGA GATGGCGCCT
GGCATGGAGA TAGAGATTGC CCTGCGCAAC TATGATCTGC CCCATACCTG GTCGAGCCTG
ATCGAGAAGA AGCTGCGTAA GATCCCCGAT GAGGTGACCG AAGAGGATAA GCTGGGCAGA
GTCGATCTGC GCAAGCTACC TTTGGTTACC ATAGACGGTG AAGATGCGCG CGACTTCGAC
GATGCCGTGT ACGCCGAGAC CAAGAAGAGC GGCGGCTGGC GCCTGTGGGT CGCCATCGCC
GACGTGAGTC ATTATGTGCG CACCGAGTCG GCGCTGGACA AAGAGGCCCG CGCCCGCGGT
AACTCCGTCT ACTTCCCGTC TCAGGTTATC CCCATGTTGC CGGAGAAGCT GTCTAACGGC
CTCTGCTCCC TCAACCCTGG GGTCGACCGC CTCTGTATGG TGGCCGAGAT GACCATCTCG
GCGGCGGGCA AGCTGTCGGG TTACAAGTTT TACCCGGCGG TGATGCACTC CCACGCGCGC
CTCACCTATA CCCAGGTGGC GGAGATGCTC GAGGGCGGCG AGGTGAGCGA TGAGCTCAAG
CCACTCTTCC CGCATTTGCA GACCCTGCAG TCGCTCTACC TGACCTTGGA CGATACCCGT
GCCCAGCGCG GTGCCATCGC CTTTGAGACC ACGGAAACCC AGTTTATCTT CAACGCCGAT
CGTAAGATCG AGCGCATCGA GCCGCGCACC CGTAACCAGG CCCATAAGAT CATCGAAGAG
TGCATGATCC TGGCCAACGT GGCGGCGGCC AAGTTTGTGA AGAAGCATAA GGGCGAGGTG
CTCTACCGGG TGCATGAGGC GCCGTCTGAG CAGAAGCTGA CCAACTTCAA GGACTTCCTC
AAGGAGCGCG GCCTGTCGAT GGGCGGTGGC CTAGAGCCTG AGCCGGCCGA CTATCAGGCC
TTGATGGAAC AGGTGGTCGA CAGACCCGAT GCCGAGCTGA TCCAGGTGAT GTTGCTGCGC
TCCATGCGTC AGGCAACCTA CACCCCGGAT AACGAGGGCC ACTTCGGCCT GGCACTGGAG
GAGTACTCTC ACTTTACCTC GCCGATTCGC CGCTACCCGG ACCTCATCCT CCATAGGGTG
ATCCGTTACC TGTTGGCGAA GGAACGTGGT GAGGCCAGCG ACAAGTGGAC GCCAGATGGC
GGCTATCACT ACCAGATCGA AGAGCTGGAT CTGCTGGGCG AGGAGTGTTC CAACACAGAG
CGGCGCGCCG ACGAGGCGAC CCGCGATGTC AGCGACTGGC TAAAGTGTGA GTTTATGCGT
GACCATGTGG GCGATACTTT CGAGGCGGTG ATCGCCTCTG TGACTCACTT TGGCATGTTT
GTCCGTCTGA GCGATCTTTT CATCGATGGT CTGGTGCATA TCTCCACCCT GGGTGGCGAC
TATTATCACT ATGATAATAT GCGTCAGCGC CTGGTGGGCG AGGCCTCGGG CCAGGTGTAT
CAGATAGGCG ACCCAGTTAC CGTCAAGGTG GCCGCGGTCA ACCTGGACGA TCGCCAGATC
GATCTCATGA TGGTGGGCGA CGATGGTAAG ACGTCGCGCC CCCGCCGCGC CAAGAAGCCA
CTGACCGCCC GCGAGCGGGT CAACCTCGAG GGTGCCAAGA TGGCGCGCAA GGGTAAAGAA
GATGACAAGC CGAGCGGTAA GCGCCGCTCC GCCAGACGCA GCGATGCTAA ACCTGGGACA
AGTAAGCCCG GAGCAGGTAA GTCGGGAGCC GGTAAGGCGG GCGCGAGCAA GTCGAAGGCC
GGGGCGAAGA AGTCATCGGC CAAGCCAGGC GCCAAGAAAC GTAAGAGCGT GAAGAAGCGC
AGCAGTAAGA AATAA
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| Protein sequence | MIKDPHLKRE QEKYDNPIPS REYILDYLRS QQSPLNREKI AQALNISDEE QLEALRRRLR
AMERDGELVF TRGQAYGLPE RMDLLSGTVL GHKDGFGFLK LDEGGDDLFI NNRDMLMYFH
GDKVLAQKAG VDRKGRREAR IVRLTHERTA PLVGRFHLDS GMAFVITDDK RITQEILIPD
DDRNGARQGD VVVIELTRRP GRYMKAAGKV TEVLGKEMAP GMEIEIALRN YDLPHTWSSL
IEKKLRKIPD EVTEEDKLGR VDLRKLPLVT IDGEDARDFD DAVYAETKKS GGWRLWVAIA
DVSHYVRTES ALDKEARARG NSVYFPSQVI PMLPEKLSNG LCSLNPGVDR LCMVAEMTIS
AAGKLSGYKF YPAVMHSHAR LTYTQVAEML EGGEVSDELK PLFPHLQTLQ SLYLTLDDTR
AQRGAIAFET TETQFIFNAD RKIERIEPRT RNQAHKIIEE CMILANVAAA KFVKKHKGEV
LYRVHEAPSE QKLTNFKDFL KERGLSMGGG LEPEPADYQA LMEQVVDRPD AELIQVMLLR
SMRQATYTPD NEGHFGLALE EYSHFTSPIR RYPDLILHRV IRYLLAKERG EASDKWTPDG
GYHYQIEELD LLGEECSNTE RRADEATRDV SDWLKCEFMR DHVGDTFEAV IASVTHFGMF
VRLSDLFIDG LVHISTLGGD YYHYDNMRQR LVGEASGQVY QIGDPVTVKV AAVNLDDRQI
DLMMVGDDGK TSRPRRAKKP LTARERVNLE GAKMARKGKE DDKPSGKRRS ARRSDAKPGT
SKPGAGKSGA GKAGASKSKA GAKKSSAKPG AKKRKSVKKR SSKK
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