| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3277 |
|---|
| Symbol | alr |
|---|
| ID | 4921113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3920029 |
|---|
| End bp | 3921105 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640164889 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_001095402 |
|---|
| Protein GI | 127514205 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.323363 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000258476 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | TTGAAACCCT TTCCCCGAGC AGAGATCAGC GGCGATGCGC TGAAAGCTAA CCTAAAGCGA
TTACGCCAGC TGGCACCCCA GAGTAAGGTG ATGGCCGTGG TGAAGGCCAA CGGCTATGGT
CACGGCCTGT TGAATGTGGC CCATTGTCTG GCCAGCGCCG ACGGTTTCGG CCTGGCGCGC
CTCGAAGAGG CACTGGAGCT CAGGGCCGGT GGTGTGAGCG CCAAGCTGCT TCTGCTGGAA
GGCTTCTTTC GCCCAAGCGA CGTGGCGACC CTAGTCGAGC ATGATATCGA TACCGTGGTG
CACCACGAAT CCCAGCTCGA GATGCTGGAG GCCGCCAGCC TAGCCAAGCC GGTGACAGTG
TGGATGAAGA TAGATACCGG CATGCATCGT CTGGGCTTTA ACCTGGATCA GTTTGAGGCT
ATCTATCAGC GTCTGCAGGC CTGTGCCAAC GTGGCCAAGC CCATTAATCT GATGACACAT
TTTGCCTGCG CCGACGAGCC GGATAATCCG GCGACCGCCG AGCAGGCGCG CCGCTTCGAG
CAGATGACGG CGAACTTGCC GGGTGATCGC ACCCTGGCCA ACTCGGCCGC GACCCTCTAC
TGGCAGGCGA CTCAGGCCGA CTGGATCCGT CCGGGGATCG CGCTTTATGG CGTTTCGCCT
GTGGTTGGCG ATCTCGGTCG CAATCATGGC CTGGAGCCCG CCATGGAGCT GGTGTCTCAG
CTGATTGCGG TACGGGATCA TAAGGCCGGC GATCCCGTCG GCTATGGCAG CTACTGGCGC
GCCAAGCAAG ATACCAAGCT AGGTGTGGTG GCCATAGGTT ATGGCGACGG TTATCCCCGC
AACGCCCCAG AAGGCACCCC TGTCTGGGTC AATGGCCGCC TGGTACCCGT GGTGGGACGT
GTCTCCATGG ATATGCTGAC GGTGGATCTC GGCCTGGATG CCACAGACAA GGTGGGCGAT
ACCGCCGTGC TCTGGGGCAA GGCGCTGCCG GTCGAAGAGG TGGCCGAGCA TATCGGCACT
ATCGCCTATG AGCTGGTGAC TAAGCTGACT CCCCGCGTCG CCGTCTGCCT CGAATGA
|
|---|
| Protein sequence | MKPFPRAEIS GDALKANLKR LRQLAPQSKV MAVVKANGYG HGLLNVAHCL ASADGFGLAR
LEEALELRAG GVSAKLLLLE GFFRPSDVAT LVEHDIDTVV HHESQLEMLE AASLAKPVTV
WMKIDTGMHR LGFNLDQFEA IYQRLQACAN VAKPINLMTH FACADEPDNP ATAEQARRFE
QMTANLPGDR TLANSAATLY WQATQADWIR PGIALYGVSP VVGDLGRNHG LEPAMELVSQ
LIAVRDHKAG DPVGYGSYWR AKQDTKLGVV AIGYGDGYPR NAPEGTPVWV NGRLVPVVGR
VSMDMLTVDL GLDATDKVGD TAVLWGKALP VEEVAEHIGT IAYELVTKLT PRVAVCLE
|
|---|
| |