| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3270 |
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| Symbol | |
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| ID | 4921303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3912080 |
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| End bp | 3913504 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164882 |
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| Product | SSS family solute/sodium (Na+) symporter |
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| Protein accession | YP_001095395 |
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| Protein GI | 127514198 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4146] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.291687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00139389 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACAGA CAATACAGGT GGCGATCTTC GTCGCCCTCA CGACGCTGGT CGCCCTGATC
ACCTACCTCA AGTGTCGCAA GGTGACCCGA GACGCCAACG ACAGCCGCGA CTACTTTCTC
GCCGGCGGCG GCCTGAGCTG GATAGTGGTC GCCGGCTCCT TGATGATGAC CAACATCAGC
GCCGAGCAGA TCGTCGGCAT GAATGGTGCC CAGACCCTGC TGGTCGCCTG GTGGGAGATA
GCCGCCGCAA TCGGTCTGAT CATCCTGGCC AAGTGGCTGA TCCCCATCTA TTACCGCTAC
AACTGCACCA CCACCACAGA GCTGCTGGAG CGTAAGTATC AGGACAAGGG GATCCGCGCC
ATGGTCTCAC TGCTCTTCAT GCTAGGCTAC GCCTTCATCT TGCTGCCGGT GGTGCTCTAC
ACGGGTTCGC TGTTTATGAA GTCCATGTTC GGCCTCTCCA TCTCTGTCAC CGTGCTGGCG
ATCATCTTCG CCGTGGTGGG CGCCATCTAC GCCATCTTCG GCGGCCTGAG AGCCATCGCC
ATCTCAGATA CCCTCAATGG CCTGGGGCTG ATCTTGATGG GGCTGGCGGT CTCCTATCTG
GCAATGCACG CCGTGGACTG GGATCTCTCC GGCATCCCGC TGGAACGCCT GACCCTGATC
GGCGATAGCC AGTCGGATAT TCCCTGGTCG ACCCTGCTTA CCGGGATGAT CTTCATTCAG
ATCTTCTACT GGGGCACCAA CATGGTGATC ACCCAGCGCG CCCTGGCCGC CAAGTCGGTG
AAGGAGGCGC AGAAGGGCCT GTACGCCGCC GTGGTGATGA AGCTGATCAT CCCGGTGATC
GTGGTGCTAC CGGGCATAGT CGCCTTTAAG CTCTATGGCG ATGTGGGCGA CGTGGCCTAC
GGCAAACTAG TGGGCGACCT GCTGCCTAGC TGGCTCTCTG GCGCCTTCGC CGCGGTGATC
GCCGGCGCCG TGCTCAGCTC CTTCAACTCC TGTCTCAACT CGGCCGCCGC CCTCTACACC
TGCGACATCC ACCAAAACTA CATCAACGCC GATGCCGACG TGCGCAAGAT AGGCTCCCGG
GTCGCTCTGC TGTTCACCCT GATCTCGGTC GCCCTGGTGC CCCTGTTTGC CCGCTCGGAG
AGCATCATTG CCCTGCTGCA ACAGCTCAAC GGCCTCTACT CGATGCCGGT ACTGGCGGCC
TTTATCTGTG CGCTAGTCTT CAAAAATGTC AGCGCCAAGG CGATAAAATG GGGGCTGGTC
TTCGGGGTCT TGCTCTATGC CCTGTTCACC TTCATCTGGA GTCCGCTGCA CTTCATTCAC
CTGATGGCGA TCACCCTGCT GGCGACCATA CTGGTTACCC TGGTCTTTAG TCGCCTGTTT
GCCCAGCCTG TCATCGCCCC CGTCGCCGAG CCAACCCTGG ACTAA
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| Protein sequence | MEQTIQVAIF VALTTLVALI TYLKCRKVTR DANDSRDYFL AGGGLSWIVV AGSLMMTNIS
AEQIVGMNGA QTLLVAWWEI AAAIGLIILA KWLIPIYYRY NCTTTTELLE RKYQDKGIRA
MVSLLFMLGY AFILLPVVLY TGSLFMKSMF GLSISVTVLA IIFAVVGAIY AIFGGLRAIA
ISDTLNGLGL ILMGLAVSYL AMHAVDWDLS GIPLERLTLI GDSQSDIPWS TLLTGMIFIQ
IFYWGTNMVI TQRALAAKSV KEAQKGLYAA VVMKLIIPVI VVLPGIVAFK LYGDVGDVAY
GKLVGDLLPS WLSGAFAAVI AGAVLSSFNS CLNSAAALYT CDIHQNYINA DADVRKIGSR
VALLFTLISV ALVPLFARSE SIIALLQQLN GLYSMPVLAA FICALVFKNV SAKAIKWGLV
FGVLLYALFT FIWSPLHFIH LMAITLLATI LVTLVFSRLF AQPVIAPVAE PTLD
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