| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3269 |
|---|
| Symbol | |
|---|
| ID | 4921302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3908831 |
|---|
| End bp | 3912061 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164881 |
|---|
| Product | Beta-galactosidase |
|---|
| Protein accession | YP_001095394 |
|---|
| Protein GI | 127514197 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00255337 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACC GCTTCTCTCT GCTACAGAGA CTCTCCTATA CACTTGCATT CTCTCTAGTC
TTTGGGCTGG TAGTCTCCAA CCCGGCGCTG GCAAGGGATC GCTGGCAGGA TCACACCCTA
TTCGAGGTCA ACAAACTGGC GCCCCATGCC AGCTTCTTCG GTTATGAATC AGAGCCTCTG
GCGCTGCTCG ACGAGATGGA CCGTAGCCAG CTTTATCTGG ATCTCAACGG CCGCTGGCGC
TTTCATCTAG CCAAGAATCC CGATGCCACC CCCAAAGAGT TCGCCGCTCC CGAGTTTGAT
GCCAGCCACT GGGGTAGCAT ACAGGTGCCG GGCAATTTCG AGACCCAGGG CTACGGCCAC
GCCATCTACC TCGACGAGCG CTATCCCTTC GACACGAAGT GGCCCGATGC GCCGAGCGAT
CACAACCCCA CAGGCCTCTA CCGCAAGACC TTTACCCTGC CCGCCCATTG GCAGCAAAAA
CAGGTGTTTA TCCACATAGG CGCGGCGCGC TCGGCCCTCA CCCTGTTCGT CAATGGCCGT
GAGGTCGGCT ATAGCCAGGG CGCCAAGACC CCGGCTGAGT TCGACATTAC CCCCTACCTG
CAAGCGGGCG ACAATCTAGT CGCCATGCAG TTGATCCGCT GGAGCGACGC CAGTTACCTG
GAAAGCCAGG ATATGCTGCG CATGACAGGG ATAGAGCGCG AGGTCTACCT CTATGCCACC
CCCAAGCAGC GCATAGAAGA TATTCAGGTT GTCACTCATC TAAACGAGGA TCTCACCCGC
GCCAAGCTCG CCATCAGGGT CGATATCGCC AGCCACCAGC CAGGGGTAAG AGCCCTTGAA
TTGGAGGCGC GCCTGCTGGA TCCCCAGGGC AAGCCGGTCG CGAAAGCTAA CCAACGCCTG
AGCCTGAAAG GCGATGCCAA GCCCGTCTTT AGCCAGACCC TAATATCCCC CAAGCTGTGG
AACGCCGAGA TGCCGAATCT GTACCGGCTC ATCCTGACCC TCAAGACAGA AAAAGGAGAG
ACGCTTCAGG TCGCCAGTCA GCAGATAGGC GTGCGCAAGA TCGCCATCGA AAACGGCCAG
CTTAAGGTCA ACAACAAGGC GATCACCATA CGCGGCGTGG ATCGTCACGA GACAGATCCC
CAAACCGGCC ATGTGGTCAG CCGAGAAACC ATGGAGCTGG ATATCCGCTT GATGAAGCAA
AACAATATCA ATGCGGTGCG CTCCAGCCAC TACCCCAATC ATCCCTACTG GCTCAGCCTC
GCCGACCGCT ATGGCCTGTA TGTGATCGAT GAGGCCAATA TAGAGTCCCA CCCGCTGGCG
ATAGACGACA AGACCCAGCT GGGCAACGAG ATGAGCTGGC TGCCCGCCCA TCAGGCGCGC
ATCGAGCGTA TGGTCGAGCG CGACAAGAAC CACCCCTCGG TGATCATCTG GTCTCTGGGT
AACGAGGCCG GTGAAGGCAA GCTGTTTGAG CGCCTCTATC AGTGGATAAA ACGGCGGGAT
CCCAATCGAC CTGTGCAGTA TGAACCGGCG GGCGAGGCGC CTTACACGGA TATCGTCGCC
CCCATGTATC CCTCCATCGA GCGGATACGC GAATATGCCG AGCGTGCCAG CGACCGACCG
CTGATCATGA TCGAATACGC CCACGCCATG GGCAACTCGG TAGGCAACCT GCAAGACTAC
TGGGATGTGA TAGAGGCCTA TCCCCAGCTG CAGGGCGGCT TCATCTGGGA CTGGGTGGAT
CAGGCGCTGG CCTTCAGCAA CGATTTAGGT CAGAGGTACT GGGCCTACGG CAAGGACTAT
CACCCCGATA TGCCCACAGA CGGCAACTTC CTCAACAACG GCCTGGTGGA TCCCGACCGT
AACCCCCATC CCCACCTGAG TGAGGTGAAA AAGGTCTATC AACCCATCAA GTTGAGAGAC
TTTAAGGTTG AGGGTGATAA GGCCTCAGTG AATCTCATCA ACGGCTTCGA CTTCGCCTCC
ACCTCAGGCC TGAGCCTGAA CTGGACGCTA CAAAAAGATG GCAAGATCAT CGCCAGCAAG
CGCCAGGCCA TGCCGATACT CTCCCCCGGC GAGCAGGCCC GTGTCAGCCT CACCCTGCCG
GGCAAACAGA GCCTCAGCGC CCCCTTCGAG TATCACCTGC TACTCGAGGT ACTGGTCGAT
ACCCCTAGAC CCCTGCTGCC GAGCGATCTC CGCATCGCCT TCGAGCAGTT CGCCCTGCCG
CGCTTCGGGA CTAAAGCCGC TTATCAAGTA AAGAAAAACC AGGCCAAGAT CAGCGAAGAT
AGCGGCAGCT ATCGCCTCAC CTCGGGTGAG CTGAGCTATG AGTTTGACAA ACGCAGCGGC
TGGCTGACCC AGATCTACCA AGAGGGAGAG CCCCAGCTTA AGGCGCCACT GATGGCCAAC
TTCTGGCGCG CGCCAACCGA CAACGACCTG GGTAACCAGA TGCCGGATTG GGCAGGGGCC
TGGCAAGACG CGGCAACGGA GCTAGAAGTC ACGGCAATCG ACGCCGACCT AGCCCTTGGC
CTGACCATCA GCCAGACCCA TGCCGAGAAG GGCTTTAGCC TGCGCACCCG CTATAGCCTG
GATAATGCCG GACGCCTGAT GGTCGACAGC CAGTTTATCC CTGGGAATAA GCCGCTTGCC
GATCTGCCCC GCTTCGGCTT CAGCACCAGG CTAGGCTTTG AGCACAGATA CCTGAGTTAC
TTTGGCCGCG GCCCAGAGGA GACCTACGCC GATCGCCAGT CGGGCAATCC CCTGGGCTGG
TACGCCCTAC CGATAGAGCA AACCTATCAC AGATACCCAA GACCCCAGGA GACTGGGCAG
CGCACTCAGG TGCGCTACGC CGCGGTGACA GATCAAAGGG GTCAAGGTTG GCTGGCGATC
GCTAACCAGG CTCACGCAGG AGAACAGGAC AGAAAGGAGG CAGATGAGGT CGCCACCCTA
CAGACCAGCC TCTGGCCCTT CGCCCAGGCC GACATAGATT TTCGCCGCGG CGATGCCCAG
GACTCGGCCT CGGGTCTGGT GGCCGTCACC CGCAACCACG GCGCCGAGAT CCCGCTAAGG
GAGTTCGTCA CCTGGAACAT CGATTACCGC CAGATGGGCG TCGGCGGTGA TACCTCCTGG
GGCCGTCCTG TGCACGGGCC CTACCGCATC AAGGCCGAGC CGATCCGCTT CGGCTTTACC
CTGATGCCAG TGAGCAGCGA TGACGATATC CGCACCCTGG CAAGACAATA A
|
|---|
| Protein sequence | MINRFSLLQR LSYTLAFSLV FGLVVSNPAL ARDRWQDHTL FEVNKLAPHA SFFGYESEPL
ALLDEMDRSQ LYLDLNGRWR FHLAKNPDAT PKEFAAPEFD ASHWGSIQVP GNFETQGYGH
AIYLDERYPF DTKWPDAPSD HNPTGLYRKT FTLPAHWQQK QVFIHIGAAR SALTLFVNGR
EVGYSQGAKT PAEFDITPYL QAGDNLVAMQ LIRWSDASYL ESQDMLRMTG IEREVYLYAT
PKQRIEDIQV VTHLNEDLTR AKLAIRVDIA SHQPGVRALE LEARLLDPQG KPVAKANQRL
SLKGDAKPVF SQTLISPKLW NAEMPNLYRL ILTLKTEKGE TLQVASQQIG VRKIAIENGQ
LKVNNKAITI RGVDRHETDP QTGHVVSRET MELDIRLMKQ NNINAVRSSH YPNHPYWLSL
ADRYGLYVID EANIESHPLA IDDKTQLGNE MSWLPAHQAR IERMVERDKN HPSVIIWSLG
NEAGEGKLFE RLYQWIKRRD PNRPVQYEPA GEAPYTDIVA PMYPSIERIR EYAERASDRP
LIMIEYAHAM GNSVGNLQDY WDVIEAYPQL QGGFIWDWVD QALAFSNDLG QRYWAYGKDY
HPDMPTDGNF LNNGLVDPDR NPHPHLSEVK KVYQPIKLRD FKVEGDKASV NLINGFDFAS
TSGLSLNWTL QKDGKIIASK RQAMPILSPG EQARVSLTLP GKQSLSAPFE YHLLLEVLVD
TPRPLLPSDL RIAFEQFALP RFGTKAAYQV KKNQAKISED SGSYRLTSGE LSYEFDKRSG
WLTQIYQEGE PQLKAPLMAN FWRAPTDNDL GNQMPDWAGA WQDAATELEV TAIDADLALG
LTISQTHAEK GFSLRTRYSL DNAGRLMVDS QFIPGNKPLA DLPRFGFSTR LGFEHRYLSY
FGRGPEETYA DRQSGNPLGW YALPIEQTYH RYPRPQETGQ RTQVRYAAVT DQRGQGWLAI
ANQAHAGEQD RKEADEVATL QTSLWPFAQA DIDFRRGDAQ DSASGLVAVT RNHGAEIPLR
EFVTWNIDYR QMGVGGDTSW GRPVHGPYRI KAEPIRFGFT LMPVSSDDDI RTLARQ
|
|---|
| |