Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3260 |
Symbol | |
ID | 4921337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3898387 |
End bp | 3899415 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640164872 |
Product | porin |
Protein accession | YP_001095385 |
Protein GI | 127514188 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000138522 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0127606 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT CTCTAATCTC TGCATCAGTA GCATCTGTTA TTGCACTGAC CTCATTCGGC GCGCTAGCCG ATGGCCCTAA CTTCTACGGT CGTTTAGACC TTTCTGTGAC TAACTCTGAC AAGGGTTACA CCACTCAAAA CAGTAAAGAA GGTACTGTTC TAGAGAACAA CTTCTCTAAC CTAGGTGTGA AAGGTTCTGA AAAGATTTCT GACGGTATCG ATGTTATCTA CCAAATGGAA TTCCAGGTTG AAAACACTAC CCAAACTAAA GACAAGAGCG GCGACGACGT TGTCTTTAAA GCACGTAACA CATTCCTAGG TCTTAAGAGC GCAGCTGGTA CTGTTCTTGT TGGTCGTAAC GACACAGTAT TCAAGCAATC TGAAGGTGGC ATCGACCTAT TCGGTAACAC CAACGCCGAT ATCGACCGTC TGGTAGGCGC GCAAACTCGT AGCGCCGACG GTATCTGGTA CTACTCTCCA AAGATCGCCG ACCTGATCAC TGTAAACGCA ACCTATCTTG TAGAAGATAA CCAGAGTTCA GATGATAGCC AATATGCATT AAGCGCGACT CTGGGTGACA AGAAGTTCAA GGCACAAAAC TACTATGTAG CAGTAGCTTA CAACAAAGGC ATCTCTGGTA TCGACGCATA CCGTGGTGTT GCTCAAGTTA AGCTAGGCGA CTTCAAAGTT GGCGGTCTAT TCCAAAACTC TGAAAGCATC GTTGACGGTT CAGAAGACAA CAACACTTAC ATCGTGAACG TTGCCTACAA CCTGAACGGC GTTAACCTGA AGGCTGAGTA CGGTAAAGAC GAAGCTGGCT TCGGTAGATA CTACAGCAAA GCTAAAGGTG TAGCAGGTAC TGACATCAAC GTGACTAACA TCACTGTGGG TGCTGACTAC CGCGTAGCTA AATCAACTCT GATCTACGGT CACTATGCAA TGTACGAAGG CGACCACAAA GTTGCTGGCA TGAAAGTTGA CCTAGAAGAC GACAACATCT TCACCGTTGG TGTTCGTTAC GACTTCTAA
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Protein sequence | MKKSLISASV ASVIALTSFG ALADGPNFYG RLDLSVTNSD KGYTTQNSKE GTVLENNFSN LGVKGSEKIS DGIDVIYQME FQVENTTQTK DKSGDDVVFK ARNTFLGLKS AAGTVLVGRN DTVFKQSEGG IDLFGNTNAD IDRLVGAQTR SADGIWYYSP KIADLITVNA TYLVEDNQSS DDSQYALSAT LGDKKFKAQN YYVAVAYNKG ISGIDAYRGV AQVKLGDFKV GGLFQNSESI VDGSEDNNTY IVNVAYNLNG VNLKAEYGKD EAGFGRYYSK AKGVAGTDIN VTNITVGADY RVAKSTLIYG HYAMYEGDHK VAGMKVDLED DNIFTVGVRY DF
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