| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3257 |
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| Symbol | |
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| ID | 4921334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3893746 |
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| End bp | 3895491 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164869 |
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| Product | CopA family copper resistance protein |
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| Protein accession | YP_001095382 |
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| Protein GI | 127514185 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2132] Putative multicopper oxidases |
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| TIGRFAM ID | [TIGR01480] copper-resistance protein, CopA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.202502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.153342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAAAC CTACCGCCTA TGGCACAAGA AGCCCCGATG TGTTGAAAGG GACCGAGTTC
GATTTAGTGA TCGACCAAGG GCCGGTTAAT TTTACCGGTC AAGCCAACAC TGGGATCATG
ATAAATGGTT CTATTCCCGC GCCGACCCTG ATCTGGCGAG AGGGTGACAT CATTACGCTG
CGGGTGACCA ACCGATTGTC GGTGCCCACA TCCGTGCATT GGCACGGCAT TATCCTGCCC
TATCAGATGG ATGGGGTTCC CGGGTTGAGT TATTCGGGGA TTGCACCAGG AAAGACCTTT
ACCTATAGAT TTCGGGTACA GCAATCGGGC ACCTACTGGT ACCACTCCCA TACTGGTTTC
CAGGAGATGT CAGGTATGTA CGGAAGCCTC ATTATCCTGC CTAGAGAAGG CGACGGGGTG
AAGGTTGATA GGGATTTTGT GGTGCAGCTA TCTGACTGGA CTGACGAAAA TCCGATGGAA
GTGTTCGCTA AGCTCAAGCA GCAGAGCGAT TACTACAACT ATGCCCAGCC AACTATGGGC
GACTTCTTCG AGGATCTATC CCGTTACGAT CTTCGCACCG CGTTGGCGAA ACGTGAGATG
TGGAATGAGA TGCGGATGAA TCCCACCGAT CTCGCCGACC TGTCGGCGTC CACGCTCACC
TACCTATTTA ACGGGCAGCC GCCTAACGGC AATTGGACGG GCATCTTTAA GCCAGGTGAA
ACCGTACGTC TGCGATTTGT GAATGGGGCG AGTAACACGT TTTTCGACGT TCGTATTCCC
AACCTTACCA TGACGGTTAT TCAGGCAGAT GGGCAAAATA TCGAGCCAGT GTCGGTGGAT
GAATTCCGCT TCGGCCCTGG CGAAACCTAC GATGTGTTGG TTACTCCTAA GGATGATGTC
TATACCATTT TTGCCCAGTC GATGGATCGA AGCGGCTATG CCAAGGGAAC GCTTGCGGTG
CGCGATGGTT TATCGGCTCC CGTCCCCACA CTCGATAAGA TCCAATGGCT GACCATGGCC
GATATGATGG GGGCTATGGG CGGCATGGAC CACTCTTCTA TGCAGCATGG CGGCATGCAA
CACCAAGGGC ATGAGCAGTC GATGAAGCAA AGCATGGCTA TGGAGCATGG CATGTCGATG
AATCAAGGTA TGTCGATGGA TCAAAGTATG GCGATGGATC ATAGTCAGCA TCAAGGCATG
CATTCGCTTG CGACCCCATC TCAGAAGGTG CGTCATGCCG CTAGCGAATA TGGTCCTTCG
GTTGATATGC GCGTCGATAT GCCGAGAACC AGCCTGGATG ACCCTGGCGT TGGGCTGAGG
GACAATGGTC GCCGGGTGTT GACCCTAGAC GATCTTTGCT CTGTCGATGG CGTACTGACT
GACACAAACA TGCCTGTTCG GGAGTTGGAG CTTCACCTTA CCGGCAACAT GGAGCGTTAC
ACTTGGTCTT TTGACGGACT GGAATTTGGC AAGAGTACGC CGGTCGCCCT CAAGCACAAT
GAGCGGGTTC GTATCATTTT ACAGAACGAT ACTATGATGA CTCATCCCAT GCACTTGCAC
GGGATGTGGA GCGATCTTGA AGATGCTCAA GGACAATTAA GGGTCAGGCG TCACACCATT
CCCGTACAAC CCGCCCAACG TATTAGTTTC TTAGCCACGC CACAGGAGGT CGGGCGCTGG
GCCTGGCATT GTCACCTGCT GTTCCACATG GATGCCGGTA TGTTCAGGGA GGTGCTTGTA
TCATGA
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| Protein sequence | MGKPTAYGTR SPDVLKGTEF DLVIDQGPVN FTGQANTGIM INGSIPAPTL IWREGDIITL
RVTNRLSVPT SVHWHGIILP YQMDGVPGLS YSGIAPGKTF TYRFRVQQSG TYWYHSHTGF
QEMSGMYGSL IILPREGDGV KVDRDFVVQL SDWTDENPME VFAKLKQQSD YYNYAQPTMG
DFFEDLSRYD LRTALAKREM WNEMRMNPTD LADLSASTLT YLFNGQPPNG NWTGIFKPGE
TVRLRFVNGA SNTFFDVRIP NLTMTVIQAD GQNIEPVSVD EFRFGPGETY DVLVTPKDDV
YTIFAQSMDR SGYAKGTLAV RDGLSAPVPT LDKIQWLTMA DMMGAMGGMD HSSMQHGGMQ
HQGHEQSMKQ SMAMEHGMSM NQGMSMDQSM AMDHSQHQGM HSLATPSQKV RHAASEYGPS
VDMRVDMPRT SLDDPGVGLR DNGRRVLTLD DLCSVDGVLT DTNMPVRELE LHLTGNMERY
TWSFDGLEFG KSTPVALKHN ERVRIILQND TMMTHPMHLH GMWSDLEDAQ GQLRVRRHTI
PVQPAQRISF LATPQEVGRW AWHCHLLFHM DAGMFREVLV S
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