| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3252 |
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| Symbol | |
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| ID | 4921329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3890077 |
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| End bp | 3891135 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640164864 |
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| Product | porin |
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| Protein accession | YP_001095377 |
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| Protein GI | 127514180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000145814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.417141 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT CTGTTCTATC GGCAAGCATT TTCGCCACCC TCGCAGCCAC CTCATTCACC
GCGCTCGCCG ACGGTCCTCA GTTCTATGGC CGTGCCGATC TTGCCTTCAC TCACTCGGAT
AATGGCATCG CCACTCAAAA CCAGAAAGAT GGCACCATCA TAGAAAACAA CTTCTCTTGG
TTAGGGGTGA AGGGCAGCGA AAAAGTCGCC GACGGCCTGG AAGTGATCTA CCAGATGGAA
TTTGGTGTCA GCAACTATGA CAACTCAGGC AACACCTTTG CCGCGCGTAA CACCTACCTG
GGGCTAAGAA GCGTCATAGG TACCGCCCTT GTGGGTCGTA ACGACACCGT ATTTAAGGCA
TCCGAAGGTG GCTTCGACCT CTTTGGTAAC ACCAACTCAG ATATCGATCT GCTGGCCGCC
GGTCAGTCGC GTACCGCAGA CGGTATCACC TACTACTCGC CTAAGATCGC CGATCTCATC
ACATTAAATG CCACCTACCT GGTGGAAGAC AACTATGTGA CTTATAAAGA CGAGAAACGT
GTGACGCCAG ATAACATGTA TGCCCTCAGC GCCACCTTAG GTGATAAGGC GCTCAAGGCG
CAGAACTACT ATGTTGCCGC GGCCTACAAC GACAACATCG ATGACGTGAA AGCCTATCGC
GGCGTGGCAC AGGTTAAATT TGGCCAGGTG ATTCTGGGCG CCCTGTATCA GAACAGTGAA
CATGTGGACA GCAAGTACGC CAACCTAGAA GGCGATACCT ACTTTATCAA CGCCGCCTAT
GTGATGGGTA ACCTGAAGCT TAAGGCGATG TACGGTAAGG ACGATTCGGG TCTGGGCAAG
TATGTGAAGC GTTATGTGGG TGGTAGCGAT GGCGCGGGCA TGGAAACCGT GTCAGACGTA
GATCTACAAC AGTTCAGCAT AGGTGCCGAC TACCGCATCA GCAAGAGCAC ACTATTTTAT
GGTCACTACA CTAAATATGA TGGTGACCTG AAACTGGCTG GCATGAAGCA AGATCTGGGT
GACGACATAG TCACCATAGG CATGCGCTTC GACTTCTAA
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| Protein sequence | MKKSVLSASI FATLAATSFT ALADGPQFYG RADLAFTHSD NGIATQNQKD GTIIENNFSW
LGVKGSEKVA DGLEVIYQME FGVSNYDNSG NTFAARNTYL GLRSVIGTAL VGRNDTVFKA
SEGGFDLFGN TNSDIDLLAA GQSRTADGIT YYSPKIADLI TLNATYLVED NYVTYKDEKR
VTPDNMYALS ATLGDKALKA QNYYVAAAYN DNIDDVKAYR GVAQVKFGQV ILGALYQNSE
HVDSKYANLE GDTYFINAAY VMGNLKLKAM YGKDDSGLGK YVKRYVGGSD GAGMETVSDV
DLQQFSIGAD YRISKSTLFY GHYTKYDGDL KLAGMKQDLG DDIVTIGMRF DF
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