| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3239 |
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| Symbol | |
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| ID | 4921523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3868848 |
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| End bp | 3873455 |
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| Gene Length | 4608 bp |
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| Protein Length | 1535 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164849 |
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| Product | Na-Ca exchanger/integrin-beta4 |
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| Protein accession | YP_001095364 |
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| Protein GI | 127514167 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAAA AGTCAACATT ATACAACAGC CTGTGTCTCG GCTTTGTCAG CCTGATGGCG
GTGAATCACG CCCAGGCTGC TGCGTCAGCA CCTGTGGTTA GTAAGTCTGT TAATAACGTC
ACTATCCCTG CGCTGCGCGA TATTGCGCTC AACTTGAGCA AAGATACCAA GGCACGTCTT
GTGCGCGGTA AGATGGATTC GGCGTCCGGT GAAACCACCC GTAAGACCAG CGAAATCATC
CAAAACTTCG AACTCCCCTT CGTTGGTGGC ATGGGTAAGA GCGCCTCTGG CCTGAGCAAA
TCCAATAAGA CGATGGGCGT CCTAGCCCTG GGCGCAGCCG ATCCCGTGCA GCGTGACTTC
CTCGGCGACA ACATGCCATC GCCGCTGATG AGCTTCGACG GCATCGACAA TATCAACCGT
GTTGCCCCGC CCGATACCAC AGGCGATGTC GGCCCGAATC ACTATGTGCA GATGGTTAAC
GTCTCTTTCG CCATCTGGGA CAAGCAGGGC AATCAACTGA TCCCGCCAAC GCCCACCAAT
GCGATTTGGA AGAGCCTGGG GGGCATCTGT GCCCAGAACA ACGATGGTGA CCCTATCGTG
CTCTACGATT CCCTGGCGGA TCGCTGGATG ATGAGCCAGT TCGCCATCAA CCAGTCTGAC
TACCACGAGT GTGTCGCCGT GTCTAAGACG CCGGATCCTA CCGGTGAATG GCACCTGTAT
GACTTTAAGA TCAGCGACAT CAAGATGAAC GACTACCCGC ACTTCGGTGT GTGGCCAGAC
GGTTACTATA TGTCGGTGAA CCAATTCTAC CTCGATGGTC GTGAAGATCA GTGGGGCGGC
GCCGGCGCCG TGGTGTTCGA GCGTGAGAAG ATGCTGCGCG GCGAACCAGC CCGCATGGTC
TACTTCGACG ATCCTGCACC AGAGCTGGGC GGTATGCTAC CGGCCGACCT CGATGGTCTG
ACGCCGCCAC CCGAAGGCGC ACCAAACTAC TTCGTGCAAC CTATCGATGA CAGCCAGGGG
CCTGCCACCG ATGAGCTGCA TATCTGGGCC TTCAAGACAG ATTGGCAAAA TCCAGAGCAG
TCTACCTTCG AGCAGATCGC CATGTTGCCG GTGACCGGCA TGGAGTTCAG TGGCTGTAAG
GGCGGCTGTA TTCCTCAGCC TGACGTGAGC AGCGAAGACT ATCTGGACCG TATTCCTTAT
CGTCTCATGT TCCGTCTCGC CTATCGTAAC TTTGGCGATC ACGAGGCCAT GGTGCTCAAC
CACACAGTGT TTACCGGTGA CGCCGATACC AACCGCTGGA GCCCACGTTG GTACGAGATC
CGCAACCCAA GCACCACGCC GACGGTTCAC CAGCAGAGCA GCTACGCGCC TGATGGCGAT
ACCCGCTGGA TGGGCAGTGT CGCCATGGAC GCCGTGGGCA ACATCGCCCT GGGTTACACA
GTCTCTGGCC CTAACACCTA TCCGTCGGTA CGTTATACCG GCCGTCTGGC ATCGGATCCC
CTAAATACCA TGCCACAGGG TGAAAACGAG CTGGTAGCCG GTGGTAGTTC ACAACGCGGC
GCCAACGGTC GCTGGGGTGA CTACAGCACC ATGAGCGTGG ATCCTGTGGA TGATTGTACC
TTCTGGTATA CCCAGGAATA CTATGGCGAC TTGAACGCCG GCGACATCGA CTGGATGACT
CGCATCGGCT CCTTCAAGTT CCCTAACTGT ACTACGGGTC CTCAGGGTAC CCTGGTCGGC
ACAGTGACCG GCGTCGAAGG CAAGCCACTG GCTAACGCCA TGGTGAAAGC CGGCGCAGTA
ACCGCCTTTA CCGACGAGAA CGGCCACTAT GAAGTGACCA TGCCTGTGGG CAGCTATGAC
GTGAGCGTTC GCGCCTACGG CTACCAAGAA GCCAAGCACG CGGATCTGGC GATCGCCGAA
GATAGTGAGC AGACGCTGAG CGATTCACTG TCGCCGCTAC CTCTGGTTAC CCTAACCGGT
AAGGTAGTGG ATAACAGTGG TCACGGCTGG CCATTGGCGG CCAAGCTGGC CCTTGCTGGC
GAATTGGCAC CAAACTTTGA GCTGATGAAC GACCCGGCAA CCGGTGAGTT TAGCGTCGAG
GTGTACCAGG GCTGGGGCTA TAAGATAACC GCTTCTACGG CGCTGAACGG CTACAACGAG
AAGTCGCTGG ACTTCGTGGC GAGCGATACT CAGATCGCCA ACGGTGTCAC CTTAGCGCTG
GATGTAAACA ACAGCGTCTG TAGTGCCCCG GGTTACAAGG CCTACGGTAT CGTCGAAGAC
TTCGACGGCG AAACCTTTCC ACCTGCGGGC TGGACAGTGG TTAATGATGC AACTGGTGAT
GATATCGAGT GGCGTACTAA TACCGCTTGG GATCGCCCTA ACTTTACCGG TGGTAGCGGC
AAGTCGGCGG CAGTAGATAA CGACCGTTAC GGCTGGGGTA AGTATGACAC CAGTCTGGTC
TCGCCAAGCA TTCAGGTCAG TGCCCTGGAA GATAGCACCG CGCTGCAGTT CAAGTTGGAC
TTCGTCGGCG GCATCTTCGG CGGCTCTATG GTTGACCTGG ATATCAGTGT CGATGGTGGT
GCCTGGAAGA CGCTACTGAG CTATCCAGAT ACGACTCGTG AGCGTCTGGT GGACTACGAC
CTGGCCGGTG AAGTGGCCGG TGCGACCGAG TTCCGCCTGC GTTGGCACTA TCACCACATC
TATGGCGATA CCAAGCAGTG GGATAACTGG GCTCAGGTGG ACGATATCTC AATCGCCCGC
GGTTGTAGCT CGGTAGAGGG TGGCCTGGTG GCCGGTACCA TTACCGACTT CAACACTCAG
CTGCCTGTGG CTAACGTCGA GATCGTCGAC GGTCTGGGCA ACAAGGCGGT GAGCGATCAT
CAGGGTCAGT ATGTGATCTT CTCGGCCGAG GGTGAGCAGC AGATTAACCT GCATCAGGCA
GGCTACGCCG ACGTCAATGA AAATGTCAGC GTGACTGCCG ATGACGTCAC TGCCAAGGAC
TTCAGTGTCA AGGCGGGTCG TCTCAGCTCT GAAACTGAAA CCATCGAGCT GGCGGTGACC
AGTGGTCGTA ATCTGAGCGA AACCTTTGAG ATCCAAAACT CGGGCAGCAA CGATCTGACC
TTTAAGCTAG GCGAGATCAA CGCGCCGTTA GCCGCACCTG TCGAAGGGCC TAAGCTGGCT
ATCGGTGGTC GTAAGTTTGG ACCTAAGAAC CTGTGGGATC TGACGACACG TAAGATCCGC
GTGCCTTACA TTCTGCCACA GGCGGATCTC GAAGAGAGCC AGGTGGTACA GAGCTGGGCA
GTCGATCTGG TTGCCTCTAA CGGCGTGGTG TTCGACCAGT CAACGGGCGA TCTCTGGATC
AACAACCTGG GTGTGTTTGG TGGTGACGAT AAGGTCTATC GCTTCAAGCA AGATGGTACC
AAGACAGAAG ACAAGATCGA CCTGCATCCG CTGATGACTA CCCGTGGTGC CCACGCCGGT
ATGACCTACA ACAGCCGCAC CGGCAAGTTG TGGCAGATCA TGGTGGGCGG TGAGCGTTGT
ATCTACGAGT TGGATCCGGT TGAGAAGCAG GCCACTGGCA AGCGTCTTTG TCCAGATGTG
ACTACCTCGC AGCGCGGCCT GGCCTATGAC GCGGTGAACG ACCAGTTCTT CTCGGGTTCA
TTCATCGACG GCCTGATCCA TCGCTTTGGC AGCGACGGCA CTCTGCTTGA GTCGACCGAT
GTGGGTCTGC CTATCGCAGG CTTAGCCTTC AACCCAACAT CACAGCACCT GTTTGTGGCG
ACCAACAGCT TTAAGCCTAT GGATATCGAT ATCTACATCC TGGATGTGGC TAACGATTAC
CAGGTGATCG GCGGTTACGC TATCGACGGT CGTGCCGACG GCGGTGGCTC GGGTCTGACG
ATTGACTGTC AGGGCCATCT TTGGGCACTG GATATCGAGG CGCAGCAGCT GTTCGAGATC
GAGTCTGGCG AGACTGGCGT GTGTGACTTC CAGGATGTGA ACTGGTTGTC GCTACAGCCT
AACGTCGGTG ACCTGAGCGT CGCGGGTAAC CAGCAGGTGA CCCTGGATGT GGACGCCGCC
AACATGGCGC CGGGCGAGTA TGAGGTTCAG GTGCTGCTCA ACAGCAACAG CCCATACAAG
ATGCAGTCTA TTCCGGTGAA ACTGACCGTG AATGAACGTG TCCCTGGCGT ACTTGGCTTT
GCCGTGACTC ACTATGAGGC TAACGAGGCC GATGGCACTG TGACCCTGAC GGTTTCACGT
CAAGGTGGTA GCGACAACGC CCTGACCCTG GAGTACCGCA CTCTGGATGC AACGGCCAAG
GCGGGTGAAG ACTTCGAAGC CGCCTGGGGC GTCATCAAGT GGGACGACAT GGACATGGCC
GACAAGACCA TCAGCGTCAA GCTGCTAAGC GATGATGTCG AGGAGTCGAT GGAGTCCTTC
AGCGTCGCCC TGTCACAACC TACGGGTGGT GCGACCCTGA ACTCGGCAAC CATTGCCACG
GTTGAGCTGG AAGACAAAAA GTCCAGCGGC GGTAGCTTAG GCCCAGTCCT GCTTCTGCTA
CTGGGTGTCG GTTCACTGTT TAACCGTCGC CAAGCGCGTC GTTCATAA
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| Protein sequence | MFKKSTLYNS LCLGFVSLMA VNHAQAAASA PVVSKSVNNV TIPALRDIAL NLSKDTKARL
VRGKMDSASG ETTRKTSEII QNFELPFVGG MGKSASGLSK SNKTMGVLAL GAADPVQRDF
LGDNMPSPLM SFDGIDNINR VAPPDTTGDV GPNHYVQMVN VSFAIWDKQG NQLIPPTPTN
AIWKSLGGIC AQNNDGDPIV LYDSLADRWM MSQFAINQSD YHECVAVSKT PDPTGEWHLY
DFKISDIKMN DYPHFGVWPD GYYMSVNQFY LDGREDQWGG AGAVVFEREK MLRGEPARMV
YFDDPAPELG GMLPADLDGL TPPPEGAPNY FVQPIDDSQG PATDELHIWA FKTDWQNPEQ
STFEQIAMLP VTGMEFSGCK GGCIPQPDVS SEDYLDRIPY RLMFRLAYRN FGDHEAMVLN
HTVFTGDADT NRWSPRWYEI RNPSTTPTVH QQSSYAPDGD TRWMGSVAMD AVGNIALGYT
VSGPNTYPSV RYTGRLASDP LNTMPQGENE LVAGGSSQRG ANGRWGDYST MSVDPVDDCT
FWYTQEYYGD LNAGDIDWMT RIGSFKFPNC TTGPQGTLVG TVTGVEGKPL ANAMVKAGAV
TAFTDENGHY EVTMPVGSYD VSVRAYGYQE AKHADLAIAE DSEQTLSDSL SPLPLVTLTG
KVVDNSGHGW PLAAKLALAG ELAPNFELMN DPATGEFSVE VYQGWGYKIT ASTALNGYNE
KSLDFVASDT QIANGVTLAL DVNNSVCSAP GYKAYGIVED FDGETFPPAG WTVVNDATGD
DIEWRTNTAW DRPNFTGGSG KSAAVDNDRY GWGKYDTSLV SPSIQVSALE DSTALQFKLD
FVGGIFGGSM VDLDISVDGG AWKTLLSYPD TTRERLVDYD LAGEVAGATE FRLRWHYHHI
YGDTKQWDNW AQVDDISIAR GCSSVEGGLV AGTITDFNTQ LPVANVEIVD GLGNKAVSDH
QGQYVIFSAE GEQQINLHQA GYADVNENVS VTADDVTAKD FSVKAGRLSS ETETIELAVT
SGRNLSETFE IQNSGSNDLT FKLGEINAPL AAPVEGPKLA IGGRKFGPKN LWDLTTRKIR
VPYILPQADL EESQVVQSWA VDLVASNGVV FDQSTGDLWI NNLGVFGGDD KVYRFKQDGT
KTEDKIDLHP LMTTRGAHAG MTYNSRTGKL WQIMVGGERC IYELDPVEKQ ATGKRLCPDV
TTSQRGLAYD AVNDQFFSGS FIDGLIHRFG SDGTLLESTD VGLPIAGLAF NPTSQHLFVA
TNSFKPMDID IYILDVANDY QVIGGYAIDG RADGGGSGLT IDCQGHLWAL DIEAQQLFEI
ESGETGVCDF QDVNWLSLQP NVGDLSVAGN QQVTLDVDAA NMAPGEYEVQ VLLNSNSPYK
MQSIPVKLTV NERVPGVLGF AVTHYEANEA DGTVTLTVSR QGGSDNALTL EYRTLDATAK
AGEDFEAAWG VIKWDDMDMA DKTISVKLLS DDVEESMESF SVALSQPTGG ATLNSATIAT
VELEDKKSSG GSLGPVLLLL LGVGSLFNRR QARRS
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