Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3239 |
Symbol | |
ID | 4921523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3868848 |
End bp | 3873455 |
Gene Length | 4608 bp |
Protein Length | 1535 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164849 |
Product | Na-Ca exchanger/integrin-beta4 |
Protein accession | YP_001095364 |
Protein GI | 127514167 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAAAA AGTCAACATT ATACAACAGC CTGTGTCTCG GCTTTGTCAG CCTGATGGCG GTGAATCACG CCCAGGCTGC TGCGTCAGCA CCTGTGGTTA GTAAGTCTGT TAATAACGTC ACTATCCCTG CGCTGCGCGA TATTGCGCTC AACTTGAGCA AAGATACCAA GGCACGTCTT GTGCGCGGTA AGATGGATTC GGCGTCCGGT GAAACCACCC GTAAGACCAG CGAAATCATC CAAAACTTCG AACTCCCCTT CGTTGGTGGC ATGGGTAAGA GCGCCTCTGG CCTGAGCAAA TCCAATAAGA CGATGGGCGT CCTAGCCCTG GGCGCAGCCG ATCCCGTGCA GCGTGACTTC CTCGGCGACA ACATGCCATC GCCGCTGATG AGCTTCGACG GCATCGACAA TATCAACCGT GTTGCCCCGC CCGATACCAC AGGCGATGTC GGCCCGAATC ACTATGTGCA GATGGTTAAC GTCTCTTTCG CCATCTGGGA CAAGCAGGGC AATCAACTGA TCCCGCCAAC GCCCACCAAT GCGATTTGGA AGAGCCTGGG GGGCATCTGT GCCCAGAACA ACGATGGTGA CCCTATCGTG CTCTACGATT CCCTGGCGGA TCGCTGGATG ATGAGCCAGT TCGCCATCAA CCAGTCTGAC TACCACGAGT GTGTCGCCGT GTCTAAGACG CCGGATCCTA CCGGTGAATG GCACCTGTAT GACTTTAAGA TCAGCGACAT CAAGATGAAC GACTACCCGC ACTTCGGTGT GTGGCCAGAC GGTTACTATA TGTCGGTGAA CCAATTCTAC CTCGATGGTC GTGAAGATCA GTGGGGCGGC GCCGGCGCCG TGGTGTTCGA GCGTGAGAAG ATGCTGCGCG GCGAACCAGC CCGCATGGTC TACTTCGACG ATCCTGCACC AGAGCTGGGC GGTATGCTAC CGGCCGACCT CGATGGTCTG ACGCCGCCAC CCGAAGGCGC ACCAAACTAC TTCGTGCAAC CTATCGATGA CAGCCAGGGG CCTGCCACCG ATGAGCTGCA TATCTGGGCC TTCAAGACAG ATTGGCAAAA TCCAGAGCAG TCTACCTTCG AGCAGATCGC CATGTTGCCG GTGACCGGCA TGGAGTTCAG TGGCTGTAAG GGCGGCTGTA TTCCTCAGCC TGACGTGAGC AGCGAAGACT ATCTGGACCG TATTCCTTAT CGTCTCATGT TCCGTCTCGC CTATCGTAAC TTTGGCGATC ACGAGGCCAT GGTGCTCAAC CACACAGTGT TTACCGGTGA CGCCGATACC AACCGCTGGA GCCCACGTTG GTACGAGATC CGCAACCCAA GCACCACGCC GACGGTTCAC CAGCAGAGCA GCTACGCGCC TGATGGCGAT ACCCGCTGGA TGGGCAGTGT CGCCATGGAC GCCGTGGGCA ACATCGCCCT GGGTTACACA GTCTCTGGCC CTAACACCTA TCCGTCGGTA CGTTATACCG GCCGTCTGGC ATCGGATCCC CTAAATACCA TGCCACAGGG TGAAAACGAG CTGGTAGCCG GTGGTAGTTC ACAACGCGGC GCCAACGGTC GCTGGGGTGA CTACAGCACC ATGAGCGTGG ATCCTGTGGA TGATTGTACC TTCTGGTATA CCCAGGAATA CTATGGCGAC TTGAACGCCG GCGACATCGA CTGGATGACT CGCATCGGCT CCTTCAAGTT CCCTAACTGT ACTACGGGTC CTCAGGGTAC CCTGGTCGGC ACAGTGACCG GCGTCGAAGG CAAGCCACTG GCTAACGCCA TGGTGAAAGC CGGCGCAGTA ACCGCCTTTA CCGACGAGAA CGGCCACTAT GAAGTGACCA TGCCTGTGGG CAGCTATGAC GTGAGCGTTC GCGCCTACGG CTACCAAGAA GCCAAGCACG CGGATCTGGC GATCGCCGAA GATAGTGAGC AGACGCTGAG CGATTCACTG TCGCCGCTAC CTCTGGTTAC CCTAACCGGT AAGGTAGTGG ATAACAGTGG TCACGGCTGG CCATTGGCGG CCAAGCTGGC CCTTGCTGGC GAATTGGCAC CAAACTTTGA GCTGATGAAC GACCCGGCAA CCGGTGAGTT TAGCGTCGAG GTGTACCAGG GCTGGGGCTA TAAGATAACC GCTTCTACGG CGCTGAACGG CTACAACGAG AAGTCGCTGG ACTTCGTGGC GAGCGATACT CAGATCGCCA ACGGTGTCAC CTTAGCGCTG GATGTAAACA ACAGCGTCTG TAGTGCCCCG GGTTACAAGG CCTACGGTAT CGTCGAAGAC TTCGACGGCG AAACCTTTCC ACCTGCGGGC TGGACAGTGG TTAATGATGC AACTGGTGAT GATATCGAGT GGCGTACTAA TACCGCTTGG GATCGCCCTA ACTTTACCGG TGGTAGCGGC AAGTCGGCGG CAGTAGATAA CGACCGTTAC GGCTGGGGTA AGTATGACAC CAGTCTGGTC TCGCCAAGCA TTCAGGTCAG TGCCCTGGAA GATAGCACCG CGCTGCAGTT CAAGTTGGAC TTCGTCGGCG GCATCTTCGG CGGCTCTATG GTTGACCTGG ATATCAGTGT CGATGGTGGT GCCTGGAAGA CGCTACTGAG CTATCCAGAT ACGACTCGTG AGCGTCTGGT GGACTACGAC CTGGCCGGTG AAGTGGCCGG TGCGACCGAG TTCCGCCTGC GTTGGCACTA TCACCACATC TATGGCGATA CCAAGCAGTG GGATAACTGG GCTCAGGTGG ACGATATCTC AATCGCCCGC GGTTGTAGCT CGGTAGAGGG TGGCCTGGTG GCCGGTACCA TTACCGACTT CAACACTCAG CTGCCTGTGG CTAACGTCGA GATCGTCGAC GGTCTGGGCA ACAAGGCGGT GAGCGATCAT CAGGGTCAGT ATGTGATCTT CTCGGCCGAG GGTGAGCAGC AGATTAACCT GCATCAGGCA GGCTACGCCG ACGTCAATGA AAATGTCAGC GTGACTGCCG ATGACGTCAC TGCCAAGGAC TTCAGTGTCA AGGCGGGTCG TCTCAGCTCT GAAACTGAAA CCATCGAGCT GGCGGTGACC AGTGGTCGTA ATCTGAGCGA AACCTTTGAG ATCCAAAACT CGGGCAGCAA CGATCTGACC TTTAAGCTAG GCGAGATCAA CGCGCCGTTA GCCGCACCTG TCGAAGGGCC TAAGCTGGCT ATCGGTGGTC GTAAGTTTGG ACCTAAGAAC CTGTGGGATC TGACGACACG TAAGATCCGC GTGCCTTACA TTCTGCCACA GGCGGATCTC GAAGAGAGCC AGGTGGTACA GAGCTGGGCA GTCGATCTGG TTGCCTCTAA CGGCGTGGTG TTCGACCAGT CAACGGGCGA TCTCTGGATC AACAACCTGG GTGTGTTTGG TGGTGACGAT AAGGTCTATC GCTTCAAGCA AGATGGTACC AAGACAGAAG ACAAGATCGA CCTGCATCCG CTGATGACTA CCCGTGGTGC CCACGCCGGT ATGACCTACA ACAGCCGCAC CGGCAAGTTG TGGCAGATCA TGGTGGGCGG TGAGCGTTGT ATCTACGAGT TGGATCCGGT TGAGAAGCAG GCCACTGGCA AGCGTCTTTG TCCAGATGTG ACTACCTCGC AGCGCGGCCT GGCCTATGAC GCGGTGAACG ACCAGTTCTT CTCGGGTTCA TTCATCGACG GCCTGATCCA TCGCTTTGGC AGCGACGGCA CTCTGCTTGA GTCGACCGAT GTGGGTCTGC CTATCGCAGG CTTAGCCTTC AACCCAACAT CACAGCACCT GTTTGTGGCG ACCAACAGCT TTAAGCCTAT GGATATCGAT ATCTACATCC TGGATGTGGC TAACGATTAC CAGGTGATCG GCGGTTACGC TATCGACGGT CGTGCCGACG GCGGTGGCTC GGGTCTGACG ATTGACTGTC AGGGCCATCT TTGGGCACTG GATATCGAGG CGCAGCAGCT GTTCGAGATC GAGTCTGGCG AGACTGGCGT GTGTGACTTC CAGGATGTGA ACTGGTTGTC GCTACAGCCT AACGTCGGTG ACCTGAGCGT CGCGGGTAAC CAGCAGGTGA CCCTGGATGT GGACGCCGCC AACATGGCGC CGGGCGAGTA TGAGGTTCAG GTGCTGCTCA ACAGCAACAG CCCATACAAG ATGCAGTCTA TTCCGGTGAA ACTGACCGTG AATGAACGTG TCCCTGGCGT ACTTGGCTTT GCCGTGACTC ACTATGAGGC TAACGAGGCC GATGGCACTG TGACCCTGAC GGTTTCACGT CAAGGTGGTA GCGACAACGC CCTGACCCTG GAGTACCGCA CTCTGGATGC AACGGCCAAG GCGGGTGAAG ACTTCGAAGC CGCCTGGGGC GTCATCAAGT GGGACGACAT GGACATGGCC GACAAGACCA TCAGCGTCAA GCTGCTAAGC GATGATGTCG AGGAGTCGAT GGAGTCCTTC AGCGTCGCCC TGTCACAACC TACGGGTGGT GCGACCCTGA ACTCGGCAAC CATTGCCACG GTTGAGCTGG AAGACAAAAA GTCCAGCGGC GGTAGCTTAG GCCCAGTCCT GCTTCTGCTA CTGGGTGTCG GTTCACTGTT TAACCGTCGC CAAGCGCGTC GTTCATAA
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Protein sequence | MFKKSTLYNS LCLGFVSLMA VNHAQAAASA PVVSKSVNNV TIPALRDIAL NLSKDTKARL VRGKMDSASG ETTRKTSEII QNFELPFVGG MGKSASGLSK SNKTMGVLAL GAADPVQRDF LGDNMPSPLM SFDGIDNINR VAPPDTTGDV GPNHYVQMVN VSFAIWDKQG NQLIPPTPTN AIWKSLGGIC AQNNDGDPIV LYDSLADRWM MSQFAINQSD YHECVAVSKT PDPTGEWHLY DFKISDIKMN DYPHFGVWPD GYYMSVNQFY LDGREDQWGG AGAVVFEREK MLRGEPARMV YFDDPAPELG GMLPADLDGL TPPPEGAPNY FVQPIDDSQG PATDELHIWA FKTDWQNPEQ STFEQIAMLP VTGMEFSGCK GGCIPQPDVS SEDYLDRIPY RLMFRLAYRN FGDHEAMVLN HTVFTGDADT NRWSPRWYEI RNPSTTPTVH QQSSYAPDGD TRWMGSVAMD AVGNIALGYT VSGPNTYPSV RYTGRLASDP LNTMPQGENE LVAGGSSQRG ANGRWGDYST MSVDPVDDCT FWYTQEYYGD LNAGDIDWMT RIGSFKFPNC TTGPQGTLVG TVTGVEGKPL ANAMVKAGAV TAFTDENGHY EVTMPVGSYD VSVRAYGYQE AKHADLAIAE DSEQTLSDSL SPLPLVTLTG KVVDNSGHGW PLAAKLALAG ELAPNFELMN DPATGEFSVE VYQGWGYKIT ASTALNGYNE KSLDFVASDT QIANGVTLAL DVNNSVCSAP GYKAYGIVED FDGETFPPAG WTVVNDATGD DIEWRTNTAW DRPNFTGGSG KSAAVDNDRY GWGKYDTSLV SPSIQVSALE DSTALQFKLD FVGGIFGGSM VDLDISVDGG AWKTLLSYPD TTRERLVDYD LAGEVAGATE FRLRWHYHHI YGDTKQWDNW AQVDDISIAR GCSSVEGGLV AGTITDFNTQ LPVANVEIVD GLGNKAVSDH QGQYVIFSAE GEQQINLHQA GYADVNENVS VTADDVTAKD FSVKAGRLSS ETETIELAVT SGRNLSETFE IQNSGSNDLT FKLGEINAPL AAPVEGPKLA IGGRKFGPKN LWDLTTRKIR VPYILPQADL EESQVVQSWA VDLVASNGVV FDQSTGDLWI NNLGVFGGDD KVYRFKQDGT KTEDKIDLHP LMTTRGAHAG MTYNSRTGKL WQIMVGGERC IYELDPVEKQ ATGKRLCPDV TTSQRGLAYD AVNDQFFSGS FIDGLIHRFG SDGTLLESTD VGLPIAGLAF NPTSQHLFVA TNSFKPMDID IYILDVANDY QVIGGYAIDG RADGGGSGLT IDCQGHLWAL DIEAQQLFEI ESGETGVCDF QDVNWLSLQP NVGDLSVAGN QQVTLDVDAA NMAPGEYEVQ VLLNSNSPYK MQSIPVKLTV NERVPGVLGF AVTHYEANEA DGTVTLTVSR QGGSDNALTL EYRTLDATAK AGEDFEAAWG VIKWDDMDMA DKTISVKLLS DDVEESMESF SVALSQPTGG ATLNSATIAT VELEDKKSSG GSLGPVLLLL LGVGSLFNRR QARRS
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