Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3224 |
Symbol | |
ID | 4921548 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3847321 |
End bp | 3848052 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640164834 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_001095349 |
Protein GI | 127514152 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000433897 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAATTC CAAGGATCTA TCAGCTCGGC AACTATGACC TTAACCAGCA GTTGATGCTG GACGAGGAAG CCGCCGGCCA CGTCGGGCGC GTATTGCGCA TGGGCGCCGG CGAGCAGCTC GAGCTGTTCA ACGGCGATGG CCACAACTAC CTGACCGAGA TCGTCACCGC CAGCAAGAAA AATGTCGAGG TGCGGGTCCT ATCCAAGGAG GCGAACGACA ACGAGTCGCC CCTCAACCTG CATCTGGGTC AGGTGATCTC CCGCGGCGAT CGCATGGACT TCACCCTGCA AAAATCGGTC GAGCTGGGGG TCAATACTAT TACCCCACTG TTTTCCGAAC GCTGCGGCGT CAAGCTGACC GGCGAGCGTC TGGAGAAGAA GATCCAGCAG TGGCAGAAGA TAGTGATCAG CGCCTGTGAA CAGTCTGGCC GCAGCACGGT ACCAGAGGTG AGACCGGCGA TGCAGCTCGA CGACTGGTGC GGTGAAGCCA CCCAGGCCCT CAAGCTCAAT CTGCACCCCA GGGCCGACCA TGGTATCAAT GGCCTGGTGA TGGAGACTCC AAGGGTACGT CTGCTGATCG GCCCCGAAGG CGGACTGTCG CCCCAGGAGA TCGCCATGAC AGAGACCCAT GCCTTCACCG ACGTGCTGCT CGGCCCCCGC GTATTGCGCA CCGAGACCGC CGCCCTGACG GCCATCAGCG CACTGCAACT TAAGTTTGGC GACCTGAGCT AA
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Protein sequence | MRIPRIYQLG NYDLNQQLML DEEAAGHVGR VLRMGAGEQL ELFNGDGHNY LTEIVTASKK NVEVRVLSKE ANDNESPLNL HLGQVISRGD RMDFTLQKSV ELGVNTITPL FSERCGVKLT GERLEKKIQQ WQKIVISACE QSGRSTVPEV RPAMQLDDWC GEATQALKLN LHPRADHGIN GLVMETPRVR LLIGPEGGLS PQEIAMTETH AFTDVLLGPR VLRTETAALT AISALQLKFG DLS
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