Gene Shew_3223 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3223 
Symbol 
ID4921547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3846562 
End bp3847317 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content57% 
IMG OID640164833 
Productdeoxyribonuclease I 
Protein accessionYP_001095348 
Protein GI127514151 
COG category[L] Replication, recombination and repair 
COG ID[COG2356] Endonuclease I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000396495 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTAACTA CCTCATTGAG TTTGAGGCCG CTGCTGCGCG GCGCCTTGGC GTTGCTGGCG 
CTTGGCTTTA CCACGGGCGC CCTCGCCTCC CATCCCACCA GTTTTAATCA GGCCAAGCAG
GTCGCACGCA GCATCTACAG CGAGGCGCTA CCGGCCAAGA GCTTCTACTG CGGCTGCGAC
ATCAGCATCT CGGGCAAGTT GTGGCAGCCC GACTTCGAGC GCTGCGGCTA TCAGGTGCGT
AAACAAGAAA AGCGCGCCAA GCGTATCGAG TGGGAACACA TAGTCCCCGC CTGGGAATTT
GGCCACCAGC GCCAGTGCTG GCAAGAGGGC GGTCGCAAAA ACTGCGGCAA GACAGACAAA
CAATTTAAGA AGATGGAGAG CGACCTGCAT AACCTGGTAC CCGCCATCGG CGAGGTCAAT
GGCGATCGCA GTAACTTCCG TTTCAGCCAG TGGAACGCCA AGGCTGAGCA ATATGGCCAG
TGTGCCATGG TGGTCGACTT CAAGGGCAGA AAGGTGGAGC CTCCCAGCCA GACCCGCGGT
CAGATAGCCC GCACCTATCT CTATATGCAA CAGGCCTATG GCCTCAAGAT CGCCAAAAGT
CAGCTAAAAC TGTTTCAGGC ATGGGATAAA AGCTATCCAG TTGATACTAT TGAGTGCCAG
AGAGACGCCG CCATCGCGGC CAAACAGGGC AACCACAACC CCTTTGTCCA GGCCCAGTGC
CAAAAACGGA CAGATACCCA GCGTATCGCG GAGTAA
 
Protein sequence
MLTTSLSLRP LLRGALALLA LGFTTGALAS HPTSFNQAKQ VARSIYSEAL PAKSFYCGCD 
ISISGKLWQP DFERCGYQVR KQEKRAKRIE WEHIVPAWEF GHQRQCWQEG GRKNCGKTDK
QFKKMESDLH NLVPAIGEVN GDRSNFRFSQ WNAKAEQYGQ CAMVVDFKGR KVEPPSQTRG
QIARTYLYMQ QAYGLKIAKS QLKLFQAWDK SYPVDTIECQ RDAAIAAKQG NHNPFVQAQC
QKRTDTQRIA E