Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3220 |
Symbol | |
ID | 4921544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3843326 |
End bp | 3844132 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640164830 |
Product | Beta-lactamase |
Protein accession | YP_001095345 |
Protein GI | 127514148 |
COG category | [V] Defense mechanisms |
COG ID | [COG2602] Beta-lactamase class D |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0828246 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTAAGTT GGGCTGGCGG CGCGGCGGCA GTACCTCAAA CTGGGCCTGA TAAACCGGCG GCAGAGCAAG AGTCGGCCGG GGCGCTCAGG CTGGATGGTG AGATACAGGC GGTATTCGAT GCCGTGGGTG CGAAAGGCGT CATGGTGTTG CTGGATGATA AAGGGGGGAA GCTGCTGACT AACGACGCCG CCCGCAGCCA GCATCCTTAT ATTCCTGCCT CCACCTTTAA GATCCCCCAC AGCCTATTGC TGCTAGAGGC GGGGATAGTA GAAGATGAGC ATAGCCGGTT TGCCTGGGAC GGGGTGAAAC GCACATATAG CCCCTGGAAT CGCGACCATA ACTTTATTGG TGCGATGAAG TATTCCGTGG TACCCATCTA TCAAAAATTG GCGTTGCAGC TGGGGGCCGA GCGTATGGCC AGTGGGCTGG AAAATCTCGA TTATGGTAAC GCAAATATCG GCGGCGGGCT GGACAGCTTC TGGCTCGACG GTGACTTGGC GATATCGGCT CTCGAGCAGG TGCACTTCCT TAGGCGTCTG TATCACAATC GACTTCCCCT GTCAGAGCGC AGTCAGCGCA TCGTTAAGAC CATGATGCTT AACGAGGCCA ACGGCGATTG GGTACTAAGG GCCAAGACGG GTTATGGTGT GCGCAAGGGG CAGAAACTGG GATGGTGGGT CGGCTGGCTC GAGCGCGAAG AGAACACTTA CTTCTTCGCC ATGAATATGG ATATCACCTC AGATAAAGAC TTAGCGCTGC GTAAGCGGGT GGTGAAGCAT CTCTTAAAAG CCAAGGGCTG GATGTGA
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Protein sequence | MLSWAGGAAA VPQTGPDKPA AEQESAGALR LDGEIQAVFD AVGAKGVMVL LDDKGGKLLT NDAARSQHPY IPASTFKIPH SLLLLEAGIV EDEHSRFAWD GVKRTYSPWN RDHNFIGAMK YSVVPIYQKL ALQLGAERMA SGLENLDYGN ANIGGGLDSF WLDGDLAISA LEQVHFLRRL YHNRLPLSER SQRIVKTMML NEANGDWVLR AKTGYGVRKG QKLGWWVGWL EREENTYFFA MNMDITSDKD LALRKRVVKH LLKAKGWM
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