Gene Shew_3220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3220 
Symbol 
ID4921544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3843326 
End bp3844132 
Gene Length807 bp 
Protein Length268 aa 
Translation table11 
GC content56% 
IMG OID640164830 
ProductBeta-lactamase 
Protein accessionYP_001095345 
Protein GI127514148 
COG category[V] Defense mechanisms 
COG ID[COG2602] Beta-lactamase class D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0828246 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTAAGTT GGGCTGGCGG CGCGGCGGCA GTACCTCAAA CTGGGCCTGA TAAACCGGCG 
GCAGAGCAAG AGTCGGCCGG GGCGCTCAGG CTGGATGGTG AGATACAGGC GGTATTCGAT
GCCGTGGGTG CGAAAGGCGT CATGGTGTTG CTGGATGATA AAGGGGGGAA GCTGCTGACT
AACGACGCCG CCCGCAGCCA GCATCCTTAT ATTCCTGCCT CCACCTTTAA GATCCCCCAC
AGCCTATTGC TGCTAGAGGC GGGGATAGTA GAAGATGAGC ATAGCCGGTT TGCCTGGGAC
GGGGTGAAAC GCACATATAG CCCCTGGAAT CGCGACCATA ACTTTATTGG TGCGATGAAG
TATTCCGTGG TACCCATCTA TCAAAAATTG GCGTTGCAGC TGGGGGCCGA GCGTATGGCC
AGTGGGCTGG AAAATCTCGA TTATGGTAAC GCAAATATCG GCGGCGGGCT GGACAGCTTC
TGGCTCGACG GTGACTTGGC GATATCGGCT CTCGAGCAGG TGCACTTCCT TAGGCGTCTG
TATCACAATC GACTTCCCCT GTCAGAGCGC AGTCAGCGCA TCGTTAAGAC CATGATGCTT
AACGAGGCCA ACGGCGATTG GGTACTAAGG GCCAAGACGG GTTATGGTGT GCGCAAGGGG
CAGAAACTGG GATGGTGGGT CGGCTGGCTC GAGCGCGAAG AGAACACTTA CTTCTTCGCC
ATGAATATGG ATATCACCTC AGATAAAGAC TTAGCGCTGC GTAAGCGGGT GGTGAAGCAT
CTCTTAAAAG CCAAGGGCTG GATGTGA
 
Protein sequence
MLSWAGGAAA VPQTGPDKPA AEQESAGALR LDGEIQAVFD AVGAKGVMVL LDDKGGKLLT 
NDAARSQHPY IPASTFKIPH SLLLLEAGIV EDEHSRFAWD GVKRTYSPWN RDHNFIGAMK
YSVVPIYQKL ALQLGAERMA SGLENLDYGN ANIGGGLDSF WLDGDLAISA LEQVHFLRRL
YHNRLPLSER SQRIVKTMML NEANGDWVLR AKTGYGVRKG QKLGWWVGWL EREENTYFFA
MNMDITSDKD LALRKRVVKH LLKAKGWM