| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3206 |
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| Symbol | |
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| ID | 4921564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3823608 |
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| End bp | 3826091 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164816 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_001095331 |
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| Protein GI | 127514134 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATTA GCCGTCGCGA GTTTCTAAAA GCCAACGCCG CAGTTGCCGC TGCGACCACG
GTTGGCGTCA CTCTGCCAGT GAAGATCGTT GAAGCCGCTG AGCAGAATGA CAACATCAAG
TGGGATAAGG CCCCCTGCCG TTTCTGCGGC GTGGGCTGTA GCGTTTTGGT CGGCACCAAT
AACGGCAAAG TCGTTGCCAC CAAGGGCGAT CCAGAAAGTC CGGTCAACAA GGGCCTTAAC
TGTATTAAGG GCTACTTCCT GTCGAAAATC ATGTACGGTA AAGACCGTCT TACCACGCCG
CTGCTGCGCA TGAAGGACGG CCAGTATGAC AAAGAGGGTG AGTTCACCCC GGTCAGCTGG
GACAAGGCCT TCGACACCAT GGCCGAGAAG TGGAAAAACA CCCTCAAGAC CAAGGGCCCA
ACCGCCGTCG GCATGTTCGG CTCTGGCCAG TGGACAGTAT GGGAAGGCTA CGCCGCCTCT
AAGCTACACA AGGCTGGTTT CCTCACCAAC AACATAGATC CAAACGCCCG CCACTGTATG
GCCTCTGCCG TGGGTGGCTT TATGCGTACC TTCGGTATCG ACGAGCCCAT GGGCTGTTAC
GATGACTTAG AAGCCGCCGA TCAGTTTGTG CTCTGGGGCG CCAACATGGC CGAGATGCAC
CCGATCCTGT GGGCACGCCT GTCAGACAGC CGCCTAAGCA AGCCGAACAG CCGCGTGCAT
GTGCTGTCGA CTTTCGAGAA CCGCAGCTTC GATCTCGCCG ACAACCCTAT GGTGTTCCGC
CCTCAGTCTG ATCTGGTGAT CCTCAACTTC ATCGCCAACT ACATCATACA GAATGGCGCG
GTAAACAAAG AGTTCGTCAG CAAGCATACT AAGTTTGCCC TGGGCACCAC AGATATCGGC
TATGGACTGC GTCCAGACCA TCCGCTGGAG AAGAAGGCCA AGAACCCAGG CAACGGCAAG
TCGACCGCCA TCAGCTTCGA CGAGTACGCC AAGTTCGTCA GCACCTATAC CCTGGAATAT
GCCGCCAAGA TGAGTGGCGT CGAGCCTGAA AAACTCGAGA CTCTGGCCAA GGCTTACGCC
GATCCAAGCG TGAAGATCAT GAGCCTTTGG ACCATGGGCA TCAACCAGCA CGTACGTGGT
GTGTGGGCCA ACAACATGCT CTACAACATC CACCTGCTGA CAGGTAAGAT CGCCACCCCA
GGTAACAGCC CATTCTCGCT GACGGGTCAA CCATCAGCCT GTGGTACCGC CCGTGAAGTG
GGTACCTTCG CCCACCGTCT ACCGGCCGAC ATGGTTGTGG CCAATCCTAA GCACAGAGCC
GTCACCGAGA AGCTGTGGCA GCTGCCGGAA GGCACGATCC CGCCTAAGCC CGGCTTCCAC
GCCGTGCTGC AGAGCCGTAT GCTCAAAGAT GGCAAGCTCA ACTGTTACTG GACCATGTGT
ACCAACAACA TGCAGGCCGG TCCTAACATC AACGATGAGA TCTACCCTGG CTTCCGTAAC
CCAGACAACT TCATCGTGGT CTCGGATCCT TACCCAACGG TTACCGCCAT GGCCGCCGAC
CTGATCCTGC CGACCGCCAT GTGGGTCGAG AAGGAAGGTG CCTATGGTAA CGCCGAGCGC
CGCACCCATA TGTGGCACCA GCAGGTGAAG GCACCCGAAG GCGCCAAGTC AGATCTGTGG
CAGCTGGTGG AGTTCTCTAA GCGCTTCAAG GTGTCAGAAG TCTGGCCCGC CGAGCTGGTG
GCCAAGAAGC CTGAATACGC CGACAAGACG CTCTTTGATG TGCTGTTTGC CAACGGAGTG
ATCAACAAGT TCCCCACCTC AGACTGCAAG GGCGAGCTGA ACGACGAGTC GGAAGCCTTC
GGCTTCTACC TGCAGAAGGG TATCTTCGAA GAGTACGCCC AGTTTGGTCG CGGCCATGCC
CACGACTTAG CCGACTTCGA CACCTACCAT GAGACCCGCG GCCTGCGCTG GCCTGTGGTC
GAAGGCAAGG AGACGCTGCG CCGCTTCGTC GAAGGTAGCG ACCCCTATGT CAAAGCCGGC
GAAGGCTATA ATTTCTATGG TAAGCCAGAC GGTAAGGCGG TGATCTTCGC CCTGCCTTAC
GAGCCTGCCG CGGAAGAGCC TAACGCAGAA TACGATCTCT GGATGTCGAC GGGCCGCGTG
CTCGAGCATT GGCATACAGG GTCTATGACC GCCCGCGTAC CCGAGCTGTA CCGCGCCTAC
CCAGATGCAC AAATCTTCAT GCATCCGGAC GACGCCAAGG CCCGTGGTCT TAAGCGTGGT
GATGAAGTGG TCGTGGCCTC GCCTCGCGGT GAAGTCAAGA CACGTGTTGA AACCAAAGGC
CGGAACAAAC CGCCACGAGG CGTGGTATTT ATGCCATTCT TCGACGCGCG CCAACTGGTC
AACAAGTTGT TACTGGACGC CACAGATCCC CTCTCGAAAG AGACGGATTT CAAGAAGTGT
CCGGTAAAAG TGATGAAAGC CTAA
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| Protein sequence | MSISRREFLK ANAAVAAATT VGVTLPVKIV EAAEQNDNIK WDKAPCRFCG VGCSVLVGTN
NGKVVATKGD PESPVNKGLN CIKGYFLSKI MYGKDRLTTP LLRMKDGQYD KEGEFTPVSW
DKAFDTMAEK WKNTLKTKGP TAVGMFGSGQ WTVWEGYAAS KLHKAGFLTN NIDPNARHCM
ASAVGGFMRT FGIDEPMGCY DDLEAADQFV LWGANMAEMH PILWARLSDS RLSKPNSRVH
VLSTFENRSF DLADNPMVFR PQSDLVILNF IANYIIQNGA VNKEFVSKHT KFALGTTDIG
YGLRPDHPLE KKAKNPGNGK STAISFDEYA KFVSTYTLEY AAKMSGVEPE KLETLAKAYA
DPSVKIMSLW TMGINQHVRG VWANNMLYNI HLLTGKIATP GNSPFSLTGQ PSACGTAREV
GTFAHRLPAD MVVANPKHRA VTEKLWQLPE GTIPPKPGFH AVLQSRMLKD GKLNCYWTMC
TNNMQAGPNI NDEIYPGFRN PDNFIVVSDP YPTVTAMAAD LILPTAMWVE KEGAYGNAER
RTHMWHQQVK APEGAKSDLW QLVEFSKRFK VSEVWPAELV AKKPEYADKT LFDVLFANGV
INKFPTSDCK GELNDESEAF GFYLQKGIFE EYAQFGRGHA HDLADFDTYH ETRGLRWPVV
EGKETLRRFV EGSDPYVKAG EGYNFYGKPD GKAVIFALPY EPAAEEPNAE YDLWMSTGRV
LEHWHTGSMT ARVPELYRAY PDAQIFMHPD DAKARGLKRG DEVVVASPRG EVKTRVETKG
RNKPPRGVVF MPFFDARQLV NKLLLDATDP LSKETDFKKC PVKVMKA
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