| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3202 |
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| Symbol | |
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| ID | 4921592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3818564 |
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| End bp | 3821116 |
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| Gene Length | 2553 bp |
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| Protein Length | 850 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164812 |
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| Product | hypothetical protein |
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| Protein accession | YP_001095327 |
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| Protein GI | 127514130 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGCC TAGTTGTTAA CAGTCAGGCG GGCGGCGTAA AGGCGCTGCT GCGCGCCACC
CGTCTTACCC TCAGGGTATT CGCCGCCCAC TATAAGAAGG CGCCGCTGCA GGCCGGAGCG
ATACTGATCG GCATAGTGCT GGCGGTCACC CTGCTGACCG GCGTCAGGGC CACCAACGAG
AGCGCCATCG ACAGCTATGG CCAGGCCAGC GAGCTGCTGA GTGGCCAGGC CAGCAATCTT
GTCACCCCGT TGCCGGGTAA GGCACTCTCT GATTCCCTCT ATTTTGACTT GCGAACCCAG
GGGTTCCACC ACAGCCTGGC GGTGCTTCAA GGCTCGGCCC TGGATAGCGC CCAGCACCGC
TGGCAAGTCA CCGGCAGCGA TCTTATCGCC GCCCTCTCTG CTATAACGCC AAGTAATAGC
GACAGGCCGC AAACAGTCGA GCCATCAGAT AGCAAGATCC CCATGAGCGG CCCCCTACCC
TTGGCGGCCA TGCTGGCGGG CGAGCCAATT GTGGTGATGA GTGAGGCCAA CGCAAAACGA
CTGCAAGAGC CCTGGCTCAG CCTCAACGAC ATGCGTCTGA AGGTGATGGC GGTCGATGAG
AGTTACCAGC TAGGCGATCG CCTACTGATG GATATCTCCC TGGCCCAGCA GCTACTGGGC
AAGCCGGGCG AGCTCAGCTA CATCGCCCTG TTTGACCCGC CCGGCGAGCA TCAACAGCAG
CTTCTTACAT CCTTACTCAC CGGCCGGGGC GAGCTGGTAG AGAGCGATAA CGGCGAGGCG
ATGAAGGCCC TCACCAACAG CTTTCATCTC AACCTCACCG CCATGAGCCT GCTGGCCTTT
ATCGTCGGCC TGTTTATCGC CTATAACGGC GTGCGCTACA GCCTGCTCAA ACGTAAGCGG
CTGATCATCC AGCTGCAGCA ACAGGGCGTG CGCCGCGCCG CCATCATGTT CGCGCTGGGG
CTGGAGCTCA CCCTGCTGGT GCTGTTGGGC TCACTCATCG GCTTCATCCT CGGGCTACAG
CTGAGCTTTT GGTTGCAGCC TATGGTGTCT GTCACCCTGG AGCAGCTCTA TGGCGCTAAC
ATACTGCCGG GAAGCTGGCG CTGGCAATGG CTAGCCCAGG CTAGCCTGCT GACCCTGATC
GCCGCCCTGC TGGCCTGCGG ATCCCTGTTG AGGGAGCTGC TCAATCAGCC CCTCGCCCAG
AGCAGCGGCC AGCTCAGTCA GCAGCGCAGC AGCCAGCTGG CGCAGAATCG CCTCATGCTA
TTGGCCTGCC TGCTGGGCAT CATGACCCTT ATCCTGATGC CGCTCAGCCA AGACTATCGA
TTCACCATGA CGCTGCTGGG TCTGGTGGTG ATCGCCATCC CTCTGGCCCT GCCCTATCTG
CTCAGGCAGC TCATCGGCCT GCTACAGAAA ATCAGCCCCA AGGGGCTTAT CGGCTATCAG
ATCAGCGAGA CCCGTGAGCT GCTGGCGCCG CTGTCGCTCG CCATGATGGC TATGCTGCTG
GCGCTTACCG CCAATATCGC CATGAACAGC CTGGTGGGGA GCTTCGAGAT CACCCTCAAG
CAGTGGCTGG ATGCCAGGCT GCATGCACAG CTCTACCTGC GCCCACCCGC CAGCCAGATG
GCCGAGGTGG AGAAGATGCT GAGCCAGGCC CCCGAGGTGA CCGGCCTCTA CAAGCAATGG
CTGCTCAAGA GTCACTACCA ACAGACGCCC ATCTTCCTGC TGACCCGGGA TCCCTACTCC
ATCGAGCACA CCACCATCAT CAAGCAGGCG AAGCCGGATC TGTGGCGAGA TTTTTTCTCG
GCCGATCCCG AGACTAAGCC ACTCGCCCTG ATCAGCGAGC CCTTCGCCAT CAAGCAGGGT
AAGCAGCTGG GGGATAAGAT ACGTATTGCG GCCCTGGGCG AGACCGAACT CACCATAGGT
GCCATCTATT ATGACTACGG AAATCCCTAC GGCGAGGTGA TCATCCCGCC ATCTCTGTGG
CGCAGGGCTA ATCTTGGCGA GACGCCCTTG AGTCTGGCCC TCACCCTGAG CACTGACGTG
ACCCGGTTTA GCCAGCAGAT CCAGACGCGC TTCCAACTGC CAGACGCGCT GGTCTACAGC
CAGGAGAAGA TCAAGGCCCA GGCCATCACC ATGTTCAAGC GCACCTTCTC CATCACCCAG
GTGCTTAACA GCCTGACCCT GATGGTGGCC GCCATCGGCC TGTTCAGCGC CTGTTATATG
TTGACCCAGG CGCGCCTGGC GCCTATCGCG CGCCTCTACG CCCTGGGGGT CAATCGTCGT
CAGCTGGTGT GGCTGGTAGT TGGCCAGATG CTGCTCATGG TGCTACTCAC CTGTCTGGTT
GCCCTGCCGA CGGGCGCCCT GCTGGGGTAC CTGCTGATCC ATAAGGTGAC CCTGCAGGCC
TTCGGCTGGA CCATCGCCAT GGTGTGGGAC TGGCTCGCCT ACCTCGAGCT GGTAGGGCTG
GCGCTGCTGG CCAGCACGCT GGCACTCGCC TTCCCCCTCT ATCAACAAAC CAGACGCCCC
CTGGTGTCGA GCCTGCAACG GGAGGTCATA TGA
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| Protein sequence | MSSLVVNSQA GGVKALLRAT RLTLRVFAAH YKKAPLQAGA ILIGIVLAVT LLTGVRATNE
SAIDSYGQAS ELLSGQASNL VTPLPGKALS DSLYFDLRTQ GFHHSLAVLQ GSALDSAQHR
WQVTGSDLIA ALSAITPSNS DRPQTVEPSD SKIPMSGPLP LAAMLAGEPI VVMSEANAKR
LQEPWLSLND MRLKVMAVDE SYQLGDRLLM DISLAQQLLG KPGELSYIAL FDPPGEHQQQ
LLTSLLTGRG ELVESDNGEA MKALTNSFHL NLTAMSLLAF IVGLFIAYNG VRYSLLKRKR
LIIQLQQQGV RRAAIMFALG LELTLLVLLG SLIGFILGLQ LSFWLQPMVS VTLEQLYGAN
ILPGSWRWQW LAQASLLTLI AALLACGSLL RELLNQPLAQ SSGQLSQQRS SQLAQNRLML
LACLLGIMTL ILMPLSQDYR FTMTLLGLVV IAIPLALPYL LRQLIGLLQK ISPKGLIGYQ
ISETRELLAP LSLAMMAMLL ALTANIAMNS LVGSFEITLK QWLDARLHAQ LYLRPPASQM
AEVEKMLSQA PEVTGLYKQW LLKSHYQQTP IFLLTRDPYS IEHTTIIKQA KPDLWRDFFS
ADPETKPLAL ISEPFAIKQG KQLGDKIRIA ALGETELTIG AIYYDYGNPY GEVIIPPSLW
RRANLGETPL SLALTLSTDV TRFSQQIQTR FQLPDALVYS QEKIKAQAIT MFKRTFSITQ
VLNSLTLMVA AIGLFSACYM LTQARLAPIA RLYALGVNRR QLVWLVVGQM LLMVLLTCLV
ALPTGALLGY LLIHKVTLQA FGWTIAMVWD WLAYLELVGL ALLASTLALA FPLYQQTRRP
LVSSLQREVI
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