| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3200 |
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| Symbol | |
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| ID | 4921590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3812011 |
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| End bp | 3817317 |
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| Gene Length | 5307 bp |
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| Protein Length | 1768 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164810 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001095325 |
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| Protein GI | 127514128 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATGA GCAGACTTCG TACCTTTCGT AGCCGGATAA TCGTACAGAT TGCCTTACCC
CTTATCGCCA TCATGGCCAT GGTATTGAGC CTGATCGCCT GGTTTAACTA CCGGGCCGAA
GAGAGCTACC TCTATGGCGA TCTCGAGAAG CAGGCCGAGA TGGTGGCCAG CAGGGTGCAT
CATTTTCTCT CCTTCGCCGA GGAGGATACC CGTACCTTTG CCGATCTCTT AGGCCAGATG
AGTCGCGATC AGCTGGTCCA TCAAGATGGT GAGCTCAAGG CATTGCTGAC CCGGCGCCTG
GAGCGCCAGA GCGATTTCTA TGCCAGCGCC ATCGCCTTTC GCCCCAGCCT GACACCTAAT
CAACAGCCCT ATGCCCCCTA TGTCTACCGG GATCAGGACG GGGTGAAGTT CCTGGATATC
GGCGCCGACA GCTATGACTA CACCGACGGC CAATGGGCCT GGTGGAGCGA GGCGATAGAC
AAGCCCCAGG GCTACTGGTC GCTGCCCTAT TTCGACGAGG GCGCCGGTAA CATCTTGATG
ATCACCTTCT CCCACCCCTT CGGCCCCTCG AGTCCCTATT GGGGCGTGGT GACTGTGGAT
CTGGCCCTGG ACGCCCTGCC AGCTATGGCG GGGATCGATG CCGATCGCAT GCTGGTATTG
GATGACAAGG GGCGGCTGAT CTACCACAAG GATGCGCAGC TGCTGATGTC TCAGGGCACA
GATAAGTGGC TCGCCCCATC AAATGACAAC GGCGACTTCA TCACCCTACT CCAGTCGGCC
AAATCCGGGA ACAGCCGCAT GTTGGCCGCC GATGGTCAGG CCTATCTCGC CAGCGTAGGC
GTGGTGCCTA AGCTCAACTG GCGGGTGGTG ATCATGACCC AGGAGGACAA GCTCTCCCAT
CAGCTCTACA TGGGGCTCTC CTCCCTAGTG CTGACCCTGC TGCTTATCTC TGCCGTGCTT
TACCTGACGG GTTATCTCAC CGCCAGACGC CTGTCACTGC CCATCGAGCG CCTAGCCGCC
GGCATAGTGG CCTTCGGCGC CGGTAAGACC AAACATATCG AAGGCACCCG GGGCGCGGTG
ACCGAGGTGG AGACCCTAAC GGACAAGTTT AACGAGCTGG CCGAGGTGCT GGCCCAGCGC
GAGCAAGCGC TGCTGGATTC ACGCGGTAAC CGTTTCGCCA AGCTGATCGA TGGCATGAGC
GACAAGTCCT TCTACTGCTC GCTGGAGCCC GATGGTCAGA TAGCCCAGGT TTCTGCGGGT
GTCGAGAAGG TGCTGGGGGT CAGCCCGGAT CTGCTCAAGC GTAAATATCA GCGGATGTTC
TCCGACAACC CCATCAACGA GGCGAACTGG GAGTACATGG ACAGCGCCCT GCAGGGCAAT
AGTGTGCCGC CCCATCAGGT GGAGATGATC GCCGCCAACG GCAGTGTGCG TCGCCTGGAT
CTCTTCATGC AGCCGCTATT GTCGGACAAC GGCGAGCTGC TTTCCATCGA GATGCTGTTT
AACGATGTGA CCGAACAGTT CTCGGCGGCG GCGTGGTCCA ACGCCGTGCT GGAATCGGCG
CCCGAGGCTA TGTTGATCGT CGACGAGCAG GGCCAAGTCG TCTTCAGCAA CAGTCGCTGC
CAGCAGCTGT TTGGCTATGA TGCCCAGCAG ATGCTGGCGC TGAATGTCGA CCAGCTGGTG
CCCGATAGCG TCAAGCATCA TGAGGCCCTA AGAGCCAAGT TTATCGGCGA AGGGGTGGAT
CGTCGCATGG GCCTGGGGCT GGGTAAGACG CTCAAGGCAA AGAAGGCCGA CGGCAGCCTG
TTTCCGGTGG AGATTAGCCT GGGGCTGCTA CCCGCCGACA GCGACGGTTT GCGCCAGGTG
GCGGCCTCGA TACGGGACAT GACAGAAGAG TTGGCTACCG CCAAGCGGAT CAAGGACAGC
GAGAGTCGTT TCCGTGGCCT GGTGGGCAAT ATTCCCGGCG CCGTCTACCG TACCCGATTG
GGCGAGCAGT GGGTGATGGA GTATGTCAGC GACAACATCG CCGAGATCAC CGGCTATCCC
GCCGCCGACT TTATCGAGAA CAAGAAACGG GTCTTTGCCA GCCTGATCCT GGAGGCGGAC
AGGGAAGCCA CCGACACGGC GATCAACAAG GGGATCGCCG AGCAGCAGAG CTTCGAAGTG
CAATACCGTA TTCAGCACAG GGATGGCAGC CTACGCTGGG TGCACGAGAA GGGCAAGGCC
AGCTATGACG ATGAGGGCAA CGCCCTCTGG TTCGATGGCA GCATACAGGA TGTCACCCAG
AGCAAACTGG CCCAAGAGAA GATTGCCCAG TCCCAGCAGC AGCTGGAGAC GATCACTGAG
TCGATTCCCA ACACCGTCTA TCAGCTGCGT TGGATAGCCA ACGATCAGCG CTACTTCACC
TTCCTCTCCC GCGCCTGCAT CACCACCCTG GGCTTCCACC GGGATCAGCT GCTGGCGAAC
TTCGACCTGG TGGCCGACTG CATCATAGAG TCGGAGCGGG CCCGCATCAT TCGCGCCCTC
TCCGGCGAGA GCGCCTCTGG GCTCAAGTGG ATCGAAGAGT TTCGCTACCA ACACCCCACC
GGCGAGCAGC GCTGGCTACA AGCGGGGGCC AGGGGCGACC GTCAGGACGA TGGCAGCATA
GTCTGGAACG GTTACCTGAT GGATATCAGC GAGCGCAAGC AGATGGACAG GGAGCTGGCC
AAGCGCGAGG CGCACTTCAG GGCCCTGTTC GATAACGCGG GTATCGGCAT AGTCAATGTC
GACGATCGCG GCGTTATCTT AGATTGCAAC GAGCAGTTCA GCCAATACCT GCAGCTGCCG
ATCGAGCGTC TCAAGGGCAG TCTCTTCTTC GATTATCAGG ATCCTGAGCA GGGGCTCGAG
GCTAAGAACA GCTTTAAACA CCTGATGGGC GACGGCGCCG ACAGCGTCAA GTTGGAGATC
CGCCTGCTCA ACCAAGCTGG CGAGGCCAGG TGGATGGACG TCAACATGAC AGGCCTGTCC
GACAAGCAGG GGGAATATCG CTCCGCCGTG CTCTCCATGG CGGATATCAG CTCCCTCAAG
CTGCTCTCCG AGGAGCTGAC CCAGGCCAAG GATGTGGCCG ACGCCGCCAG CAAGGCCAAG
AGCGACTTCC TGGCGAACAT GTCCCACGAG ATCCGCACGC CGATGAACGC CATTATCGGC
ATGTCGCAGC TGTGTCTACA GACCAGTTTG GATAAGAAGC AGCAGAACTA TGTGGAGAAG
ATCGACCGCG CCTCCAAGTC GCTGCTGGGG ATCATCAACG ACATCCTGGA CTTCTCCAAG
ATAGAGGCGG GCAAGCTGGA TATCGAGGCA GTGCCTTTCC AGCTCGACAC TATGCTGGAA
GATCTCAGCG ACATGTTTTC GGTCAAGGCC GCCGACAAGC AGCTCGAGCT GCTGTTTGCC
GTGGCGCCTA ACATTCCCCG CCACTTAGTG GGAGATCCGC TGCGACTCAG TCAGGTGTTG
ATCAATTTGA TGAACAACGC CATCAAGTTT ACCGAGCAGG GCGAGGTGAT GCTGTCGATC
AGCCAACTGG TGCGCGAGGA TGAGGAGATA CTGCTCAAGT TCAGCGTGCG CGATAACGGC
ATAGGCCTCA CCGAGGAGCA GCGCGGCAAG CTGTTCCAGT CCTTTAGCCA GGCCGACAGC
TCCACCACCC GCAAGTATGG CGGCACCGGC CTTGGGCTGG CGATCTGTAA GCAGCTGGTG
GAACTCATGG GCGGCGAGAT CGGCGTCGAG AGTCAGTTCG GCAACGGCAG CACCTTCTTC
TTCAGCGTGC GCTTCAAGGT CGCCGACAAT CAGCTGATCA AGGTGGCCCA GGAGCTGGAA
GGAATGCGGA TTCTGGTGGC CGACGACAAC GCCACCGCCC GGGATATTCT GCGCAGCACT
CTCGAAAGCA TGGGCTTTAC CGTGGATACG GTGCGCAGCG GTGCCGAGGC GCTGAGTCGC
TGTCAGGAGA CCGACTATGG GGTGGCGCTG ATCGACTGGC GCATGCCTGA GATGGACGGC
CTGGAGACGG CGCGGCGGTT GCTGAGCGAG CGCACTAACC CGCCCAAGAC GCTGATCGTC
TCGGCCCATG CCGACGGTGA TTTTATCGAC AAGGCGGAGC AGGCGGAGAT CTCGGGTTAT
ATCACTAAGC CGATCAGCGC CTCGCGCCTG CTGGACGGCA TCATGTCGGC CCTGGGCAAG
CAAGGCGCTA TGCCGGTGCG GCGCAAGGGC AGTGAGGTAA GTCCTGCCCT GCTGGCGCAG
CTCAAGGGCA AGCGCATCCT GTTGGTGGAA GACAACGAGA TGAACCAGGA AGTGGCCAGC
GAGTTTCTCG AGCAGGTGGG GGTGATCCTC TCGATCGCCG AGAATGGTCA GGTGGCGCTG
GAGAAGCTGG CCATGCAGAG CTTCGATCTG GTGCTGATGG ATTGTCAGAT GCCGGTAATG
GATGGCTATC AGGCCACCGC CGAGCTGCGT AAGCGTCCCG AGTTGGCAGA CCTGCCGGTG
ATCGCCATGA CGGCCAACGC CATGGCCGGG GATAAGGAGA TGTGCCTGCG CGCCGGTATG
AACGACCATA TCGCCAAGCC TATCGAGGTG TCGCTGCTCT ATAAGACGCT GCTGGAATAC
CTGGGGGATG ACAGTCAGGT CATAGAGGAG ACCAGCACTG AGCAGACTGA TCAACACAGT
CAGGATGCCT ATTGGCCACA GCACCCGGCG CTGGATATCG ATAAGGGGCT GCAGCTGGTG
CAGAACTCGG CGCGTCTCTA CCGGCGGATA TTCGAGCGTT TCTATACGGG TCAGTCCCGC
TGCGCGGAGC TTATCGCCAC CGCACAGCGT GAGGGCAAGC AGGAGGAGGC GGTGCGTTAC
GCCCACACCC TCAAAGGGGT GGCCGGTAAC CTCTGCTGCC CCGAGCTGGT GGCCCTGGCC
AAGCAGGTGG AGCAGACTCT CAGCGATTCG ATCGAGGCCG ATGTGACTGA GGCGCTGACT
CAGATGGGCG AGCTGTTAGA CAGCCTGTGC ACCACCATAG GTGACTGGCT CAGTCAGACC
GGGGCCGAGA CGCTGCCGCA AGAAGATGGC GCCGAGGCGG GGGCGACTGC CGATGCGCCT
CCCATGTCGG CCCAGGAGCT GGATGCCGCC ATTAAGGAGC TGCTCAAGAT GCTGGAGGAG
GCGGACGCCG AGGCGGTGGA GAAGCTACAG GCGATCCGCG ATCGTCTGCC AACCTCGCTG
GCCAACAAGA TTGCGCCCGT GCTCAACATG GTGAACGCCT ATCAGTTTGA CGAGGCGATC
GAGCTGGTGG AGGAGATCTT TAGCTAG
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| Protein sequence | MDMSRLRTFR SRIIVQIALP LIAIMAMVLS LIAWFNYRAE ESYLYGDLEK QAEMVASRVH
HFLSFAEEDT RTFADLLGQM SRDQLVHQDG ELKALLTRRL ERQSDFYASA IAFRPSLTPN
QQPYAPYVYR DQDGVKFLDI GADSYDYTDG QWAWWSEAID KPQGYWSLPY FDEGAGNILM
ITFSHPFGPS SPYWGVVTVD LALDALPAMA GIDADRMLVL DDKGRLIYHK DAQLLMSQGT
DKWLAPSNDN GDFITLLQSA KSGNSRMLAA DGQAYLASVG VVPKLNWRVV IMTQEDKLSH
QLYMGLSSLV LTLLLISAVL YLTGYLTARR LSLPIERLAA GIVAFGAGKT KHIEGTRGAV
TEVETLTDKF NELAEVLAQR EQALLDSRGN RFAKLIDGMS DKSFYCSLEP DGQIAQVSAG
VEKVLGVSPD LLKRKYQRMF SDNPINEANW EYMDSALQGN SVPPHQVEMI AANGSVRRLD
LFMQPLLSDN GELLSIEMLF NDVTEQFSAA AWSNAVLESA PEAMLIVDEQ GQVVFSNSRC
QQLFGYDAQQ MLALNVDQLV PDSVKHHEAL RAKFIGEGVD RRMGLGLGKT LKAKKADGSL
FPVEISLGLL PADSDGLRQV AASIRDMTEE LATAKRIKDS ESRFRGLVGN IPGAVYRTRL
GEQWVMEYVS DNIAEITGYP AADFIENKKR VFASLILEAD REATDTAINK GIAEQQSFEV
QYRIQHRDGS LRWVHEKGKA SYDDEGNALW FDGSIQDVTQ SKLAQEKIAQ SQQQLETITE
SIPNTVYQLR WIANDQRYFT FLSRACITTL GFHRDQLLAN FDLVADCIIE SERARIIRAL
SGESASGLKW IEEFRYQHPT GEQRWLQAGA RGDRQDDGSI VWNGYLMDIS ERKQMDRELA
KREAHFRALF DNAGIGIVNV DDRGVILDCN EQFSQYLQLP IERLKGSLFF DYQDPEQGLE
AKNSFKHLMG DGADSVKLEI RLLNQAGEAR WMDVNMTGLS DKQGEYRSAV LSMADISSLK
LLSEELTQAK DVADAASKAK SDFLANMSHE IRTPMNAIIG MSQLCLQTSL DKKQQNYVEK
IDRASKSLLG IINDILDFSK IEAGKLDIEA VPFQLDTMLE DLSDMFSVKA ADKQLELLFA
VAPNIPRHLV GDPLRLSQVL INLMNNAIKF TEQGEVMLSI SQLVREDEEI LLKFSVRDNG
IGLTEEQRGK LFQSFSQADS STTRKYGGTG LGLAICKQLV ELMGGEIGVE SQFGNGSTFF
FSVRFKVADN QLIKVAQELE GMRILVADDN ATARDILRST LESMGFTVDT VRSGAEALSR
CQETDYGVAL IDWRMPEMDG LETARRLLSE RTNPPKTLIV SAHADGDFID KAEQAEISGY
ITKPISASRL LDGIMSALGK QGAMPVRRKG SEVSPALLAQ LKGKRILLVE DNEMNQEVAS
EFLEQVGVIL SIAENGQVAL EKLAMQSFDL VLMDCQMPVM DGYQATAELR KRPELADLPV
IAMTANAMAG DKEMCLRAGM NDHIAKPIEV SLLYKTLLEY LGDDSQVIEE TSTEQTDQHS
QDAYWPQHPA LDIDKGLQLV QNSARLYRRI FERFYTGQSR CAELIATAQR EGKQEEAVRY
AHTLKGVAGN LCCPELVALA KQVEQTLSDS IEADVTEALT QMGELLDSLC TTIGDWLSQT
GAETLPQEDG AEAGATADAP PMSAQELDAA IKELLKMLEE ADAEAVEKLQ AIRDRLPTSL
ANKIAPVLNM VNAYQFDEAI ELVEEIFS
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