Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3187 |
Symbol | |
ID | 4921682 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3793777 |
End bp | 3795933 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640164797 |
Product | hypothetical protein |
Protein accession | YP_001095312 |
Protein GI | 127514115 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.828747 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGT TACTCGTGTC AGTGGCGCTC GCCGCTGCCT TCGGCGCTCA CGCCGATGAG GGGATGTGGC AGCCCTATCA ACTGCCTGCC ATGGCAGATG AGCTGAAGGC CAAAGGGCTG GAAATCGACG CCAAATCTAT CTCTAAACTC ACCGAATTCC CCATGAACGC CGTGATCAGC CTAGGTGGCT GTACCGCGTC GTTCGTGTCG CCAAAGGGCC TGGTAGTGAC TAACCACCAC TGTGCCTACG GCTCGATTCA ATACAACTCG ACTCCAGAGA AGAACCTGCT AAAAGATGGC TTCCTGGCGA AGAACTACGG CGAAGAGCTA CCCGCTACCC CAGGTTCACG CATCTATGTC ACCGAAGCCG TGACCAATGT GACCGGTGAG GTGAAAGCCG GCCTGGAAAA CAAGGTAGGC AACGACTTCT ATCAGGGCAT CGAAGCCAAA GAGAAGCAAC TGGTTGCCCA GTGTGAGGCA GATGATGGCT ACCGCTGTCA GGTTTACAGC TTCCACGGCG GCCTGGAATA CTATCTGGTT AAGCAGCTTG AGATCCGCGA CGTGCGTCTG GTGTATAACC CGGCGGCTAG CGTAGGTAAA TACGGCGGCG ACATCGACAA CTGGATGTGG CCACGTCATA CCGGTGACTT CTCTTTCTAT CGCGGCTATG TGTCAAAAGA TGGCAAGCCT GCTGATTTCA GCAAAGACAA CGTGCCTTAC GAGCCTAAGA GCTTCCTTAA GGTGTCTGCC AAGGGCGTGA GCGATGGCGA CTTCGTCATG GTTGCCGGCT ACCCGGGTCG CACCAACCGT TACCGCACCG CCAACGAGGT GGAAAACCAG TTTGAGTGGG CCTATCCGGA AGGCAAGATG CTGCGTGAAC GCTTCATCGA GATCATCAAG GAAACCGCGC CTGAGGGCAG CGACGAGCGC ATCAAGTATG AGAGCCTGAT CGCCGGTCTG GCCAACTACG CCAAAAACTT CACCTCGATG ATCGAGTTCT ATGGCAAGTC GACCATGCTC GACGATCGCA AGGCTCGCGA GGCGGCGCTG ACTGCCTGGA TCAATAAAGA CAGCAAGCGT CAGGCCCAGT ATGGTCAAAC CATGGCCGAG CTAGACAAGC TGATCAAAGA GAGTCAGGAG CATCAGGCTC GCGACATCAT CTTAGGTTAT ATCGGTTACA CCACTATGCT GCCGACTGCC CGTAGCCTCT ACCGTCTGGC TAACGAGAAG CAGCTGGACG ACATGGCGCG TGAGCCTGGT TATCAGGATC GCGACATGAC CCGCTTCAAG TCGGGCCTTG AGCGTATCGA CCGTCGTTAT GCACCGAGTG TGGATAAGGC CGTGGTACTG GATCTGCTGA GCCGTTACGC CAAGCTGCCT AGCGAAGAGC GTATCCCTGA GCTGGACAAG GCATTCGGCA TCGGCAAGAA GTTCGACGCC GCCAAGCTGA GCAAGGTACT GGATAAGATG TACGCCAAGA CCGAGTTGGG CGACAAGGCG ACTCGTCTTG CCTGGATGGA CAAGTCGGTA GCCGATTTCA AGGCCTCTAA AGATCCTTTC ATTCAGTTTG CCGTCGCCAT GTATGACACT GATATGGCCC AGGAGAAGAA AGAGAAGGAG CTGTATGGCA AGTTGATGAA GGTGCGTCCT CAATATATGG ATGCCATCAT CGCCTACAAC AAGGAGCTGG GTAAGCCGGT GTACGCCGAC GCCAACTCTA GCCTGCGTGT GACCGTGGGT CATGTGAAGG GCTACTCGCC ACAAGATGGT CTGGTTGCCG TACCTTTCAC TCGCCTGGAA GGCATAGTGG CTAAAGACAC GGGTGAAGAT CCGTTCGACG CGCCTAAGAA GCAGCTTGAG CTGATCAAGC AGAAGCAATA TGGTGACTAC TATGTGAAAT CTATCGACTC TGTGCCGGTG AACTTCCTGT CGACCCTGGA TACCACAGGT GGTAACTCAG GTTCACCAAC CCTCAACGGC CGCGCCGAGC TTGTTGGCTT GCTGTTTGAC GGCGTCTATG AGTCAATCAT CGGCGACTGG GGTTACGATA CCGACACCAA CCGTTCTATC CAGGTAGATA GCCGCTACAT GCTATGGGTG ATGAAGTATC TGGATCACGC CGACAACCTG CTGGCAGAAA TGGAGATTGT TCACTAA
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Protein sequence | MKKLLVSVAL AAAFGAHADE GMWQPYQLPA MADELKAKGL EIDAKSISKL TEFPMNAVIS LGGCTASFVS PKGLVVTNHH CAYGSIQYNS TPEKNLLKDG FLAKNYGEEL PATPGSRIYV TEAVTNVTGE VKAGLENKVG NDFYQGIEAK EKQLVAQCEA DDGYRCQVYS FHGGLEYYLV KQLEIRDVRL VYNPAASVGK YGGDIDNWMW PRHTGDFSFY RGYVSKDGKP ADFSKDNVPY EPKSFLKVSA KGVSDGDFVM VAGYPGRTNR YRTANEVENQ FEWAYPEGKM LRERFIEIIK ETAPEGSDER IKYESLIAGL ANYAKNFTSM IEFYGKSTML DDRKAREAAL TAWINKDSKR QAQYGQTMAE LDKLIKESQE HQARDIILGY IGYTTMLPTA RSLYRLANEK QLDDMAREPG YQDRDMTRFK SGLERIDRRY APSVDKAVVL DLLSRYAKLP SEERIPELDK AFGIGKKFDA AKLSKVLDKM YAKTELGDKA TRLAWMDKSV ADFKASKDPF IQFAVAMYDT DMAQEKKEKE LYGKLMKVRP QYMDAIIAYN KELGKPVYAD ANSSLRVTVG HVKGYSPQDG LVAVPFTRLE GIVAKDTGED PFDAPKKQLE LIKQKQYGDY YVKSIDSVPV NFLSTLDTTG GNSGSPTLNG RAELVGLLFD GVYESIIGDW GYDTDTNRSI QVDSRYMLWV MKYLDHADNL LAEMEIVH
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