| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3180 |
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| Symbol | |
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| ID | 4921675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3785529 |
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| End bp | 3786245 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164790 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001095305 |
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| Protein GI | 127514108 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTCG CCCAGTATCT GGCCTTAACT GGCCGCTGCT CGCGCCGCGC CGCATCAAGA
CTGATCCGCA ACGGGCGAGT CAGCCTGGGC GATCGGCTCG CCAAGCACAC AGACAGCATC
GAGCTGATAG AGACCCCCAC AGGTACACAG GCATCACTCA GCGTCTGTGT CGATGGCGAG
CCTCTGCCCC CCATCGCCGA CAAGGCCTAC TGGATATTCA ACAAGGCGGT GGGGACAGAC
TGCCGCCTGC TGGCAGAGGA TACAACCAGC TTGATCCATC TGCTGCCACG GCAGCCGCGT
CTCTACCCCG TGGGACGGCT GGATAAAGAC TCCAGGGGGC TGCTGCTACT CACTAACGAT
GGTGAGCTGA CCCAGCGCCT GATGCACCCC AGTTTTGCCC ACCACAAACG CTACCATGTC
AGGCTAGACA GGCCCTTCGA TGATGATTTT GTGGTTAAGA TGGCAGCAGG GGTCAGCTAT
AAGGATGTCA CCACACAGCC CTGTCAGGTG ACTCGCCTAG GCCAGGACAG CTTCGAGATA
GTCCTCACCC AGGGACTCAA CCGCCAGATC CGCCGCATGA GTAAGACCCT CGGCCACAAG
GTAATAGACC TTAAGCGCGT CGCCATCGAG TCCTTAACCC TGGGCGATCT GCCAGAAGGC
GAGATGCGAC CGCTAACCCA GGCCGAATTA GACGAGCTTT GGTGCGATCT TGCCTAA
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| Protein sequence | MRLAQYLALT GRCSRRAASR LIRNGRVSLG DRLAKHTDSI ELIETPTGTQ ASLSVCVDGE
PLPPIADKAY WIFNKAVGTD CRLLAEDTTS LIHLLPRQPR LYPVGRLDKD SRGLLLLTND
GELTQRLMHP SFAHHKRYHV RLDRPFDDDF VVKMAAGVSY KDVTTQPCQV TRLGQDSFEI
VLTQGLNRQI RRMSKTLGHK VIDLKRVAIE SLTLGDLPEG EMRPLTQAEL DELWCDLA
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