| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3172 |
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| Symbol | |
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| ID | 4921949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3775635 |
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| End bp | 3776915 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164782 |
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| Product | 4-aminobutyrate aminotransferase |
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| Protein accession | YP_001095297 |
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| Protein GI | 127514100 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
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| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACG CAGAATTACA GGCGCGTAAG GTACAGGCGA TCGCCAGGGG ACAGGGGAAC
GCCTATCCCG TCTATGTGGA GCGGGCGTTA AACGCCGAGC TGTGGGATGT CGAAGGCAAG
CGCTACATCG ACTTCGGTAC AGGGATCGCC GTGTGTAACA CGGGTCATAG CCATCCCAAG
GTGGTGGCGG CGGTCAAGGC GCAGCTGGAT AACTTCAGCC ACACCTGTGT GATGGTGAAC
CCTTACGAGT CGGCGGTGGC GCTGGCGGAG CAGCTTAATC GCATCGCCCC CGGCGGTAGC
GACAAGAAGG CGATCTTCGT GACCACGGGC GCCGAGGCGG TGGAAAATTG CGTCAAGATC
GCTAGGGCCC ACACAGGGCG TCGCGGCGTT ATCGCCTTCA ACGGTGGCTT CCATGGCCGC
ACCAACCTGA CCATGGCGCT GACGGGTAAG ATCACCCCCT ACAAGCATCA GTTTGGCCCC
TTCGCCGGGG ATATCTTCCA CGCGCCTTAT CCGGTGGCGT TCCATGGCGT GAGCGTGAAA
GACTCCCTCA AGGCGATCGA GCATCTGTTT AAGGTGGATA TCGCTCCTTG TGATGTGGCG
GCGATCGTGG TCGAGCCTGT GCAGGGCGAG GGCGGTTTTT ACGCCGCGCC GCCAGAATTC
TTACAGGCCC TCAGGGCACT GTGCGATCAG CATGGTATCG TGCTGGTGAT GGATGAGATC
CAGACCGGCT TTGGCCGTAC CGGCAAGATG TTCAGCTGTG AACACGCGGG CGTCGAGCCG
GATCTGATGA CCATGGCCAA GGGGATCGCC GGTGGCTTCC CACTCGCGGC CGTGGTGGGT
AAGAGCGAGA TCATGGACGC GCCGTTGCCG GGAGGCCTTG GCGGCACTTA TGGCGGCTCA
CCCGTGGGCT GCGTGGCGGC GCTGGCGGTG CTCGAGGTGA TGCAAGAGGA GCAGCTGGTG
GAGCGCGCCG TTAAGATAGG CGACAGCTTC AATCAGGCGC TCTCTGCCCT CAAGGAGCAA
TATCCACAGC TGATTGGCGA GGTGCGCAAT CAAGGCGCCA TGATCGCCAT GGAGTTGGTG
ATCGACGGTG ACATTGAGCA GCCCAACACG GCATTGACCC AGGCGATCAT CGCCAACGCC
GCGGCCCATG GCTTGGTGCT GCTGGCCTGT GGCTTCTATG GCAACGTGAT CCGCTTCCTG
CCGGCGTTGA CCATCAGCGA TGAGATCATG GCCGAGGGGC TGGCCAAGTT TAAGACGCTG
TTCGAGAGCC TGGTGGACTA A
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| Protein sequence | MSNAELQARK VQAIARGQGN AYPVYVERAL NAELWDVEGK RYIDFGTGIA VCNTGHSHPK
VVAAVKAQLD NFSHTCVMVN PYESAVALAE QLNRIAPGGS DKKAIFVTTG AEAVENCVKI
ARAHTGRRGV IAFNGGFHGR TNLTMALTGK ITPYKHQFGP FAGDIFHAPY PVAFHGVSVK
DSLKAIEHLF KVDIAPCDVA AIVVEPVQGE GGFYAAPPEF LQALRALCDQ HGIVLVMDEI
QTGFGRTGKM FSCEHAGVEP DLMTMAKGIA GGFPLAAVVG KSEIMDAPLP GGLGGTYGGS
PVGCVAALAV LEVMQEEQLV ERAVKIGDSF NQALSALKEQ YPQLIGEVRN QGAMIAMELV
IDGDIEQPNT ALTQAIIANA AAHGLVLLAC GFYGNVIRFL PALTISDEIM AEGLAKFKTL
FESLVD
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