| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3166 |
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| Symbol | |
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| ID | 4921943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3769352 |
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| End bp | 3770080 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164776 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001095291 |
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| Protein GI | 127514094 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.190587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACAAAT CTATCCTGTT AGCCGGTTTT ACGGCCCTGT TGCTGCTGAG TGGCTGTGGC
AAAGAGCAAG ATTATCTGGT GGTAGGCACC AATGCGGCCT TTCCGCCCTT TGAATATGTG
GGCGGTGTCA GCGGCGATCA GGTAATGGGG TTTGATATCG ATCTGGCCCG CAAGGTGGCC
GAGGATGCGG GCAAGACGCT CAAGGTGGAG AACATGAAGT TCGACTCGCT GATCGTGGCC
CTCAACGCCG GCAAGATAGA TATGATCGCC TCGGGCATGA CCATCACCCC AGAGCGTCAG
GCCAGCGTCG ACTTCTCCGA GCCCTACTAC GAGGCGACCC AGGTGGTCTT GGTCAACAAG
CAGGATGACA GCATCCATAG CCTGGCGGAT CTCACCGGTA AACACTTCGC GGTGCAGCTG
GGCTCAACCG CCGACATGAT GGCCAAGAAG TACACCCAGT CGGTGACCGC CTTCAATACC
GGCTTCGAAG CGATCATGGA GCTTAAGAAC GGCAAGGTGG ATCTCGTGCT GTTCGACAGC
GAGCCGGCCG CCAACTACCT GGCCAAGAAC CCTGAGCTTA AGCTTATCAG CCTGGACTTC
CCCCCAGAGT TTTATGGTTT CGCCGTGGCC AAGAGCCAGC CCGAGCTGCT GGCCAGCATT
AACAAGACGC TGGCGACCAT GAAGCAGAAT GGTGAATACG ACGCCCTGCT CGCCAAACAT
ATGAAGTAG
|
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| Protein sequence | MNKSILLAGF TALLLLSGCG KEQDYLVVGT NAAFPPFEYV GGVSGDQVMG FDIDLARKVA
EDAGKTLKVE NMKFDSLIVA LNAGKIDMIA SGMTITPERQ ASVDFSEPYY EATQVVLVNK
QDDSIHSLAD LTGKHFAVQL GSTADMMAKK YTQSVTAFNT GFEAIMELKN GKVDLVLFDS
EPAANYLAKN PELKLISLDF PPEFYGFAVA KSQPELLASI NKTLATMKQN GEYDALLAKH
MK
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