| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3163 |
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| Symbol | |
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| ID | 4921940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3766819 |
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| End bp | 3767886 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164773 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001095288 |
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| Protein GI | 127514091 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.108328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCCCG ATGAGCAGCC ATCTAATCAG TTAGCCAACA CAGAGCCATC GGCAGAGACA
AGTGCCGAGC CAACGGCCGA TATAAGTGCC GAGCAAACGG CGGACCTGAT CGCCAAGCTA
AAAGCCGAAA ATGCGGCGCT CAAACGCGAG AACGCCAAGT TAACGCTGCT CAACGATCGC
GCCGAAGAGA AACTCTTTGC CGCACTCGAT GGCAACCGTC TCTGCCTGTG GGAGCAACAT
CTTCCCAGTG GCAACCTGAC CATCTTCAAC ATGCGGTGGG GCGAACTGCT GGGCTTTAGT
CGCGAAGAGC TTGCGGCCCA TGTGGACAGC TGGAAACAAA ATCTGCATCC GGAGGATAAG
GAGTGGGTGA TAAAGGCCTT CGAAGATCAT GTAGAGGGCA AGTCTGATTA CTATCAGGCG
GTGCACCGGA TGATCCACAA GGATGGCTCG GTCACCTGGG TGTCCGATCG CGGCCGTATC
GTCGAGCGCA AGCCGGATGG TACGCCGCTA CGTATGATGG GCACTCACAT GGATATCACC
CAGGAGAAGC GCTACGAGCA GGAGCTGTCT GAGCTGGCCC ACTGCGACCC TCTCACCAAT
CTGAGTAATC GTAAGGCGAT CACCCTGGCA TTTGAGGAGC TGTATCAGCG AGGCAGGGGC
AGCATCTTCT TCATCGATCT CGATGGCTTT AAGGAACTCA ACGACAAGCT GGGCCACAAG
TTTGGCGACC ACCTCTTGGT CCATGTGGCC CACACCCTCA GGGGCGTCAT AGGCACTCAG
GCCCAGATCG CCCGTCTCGG CGGCGATGAG TTTTTGATTC TGCACCCCAG CCAAGACCAG
ACCCTGCTCA GTGAGCGAGC CCAGTCGCTG TTGGATGTCT ATCGTCAGGC GATCATCTTA
GAAGGCACTG AGGTCAAACT CGGCCTGAGT ATCGGCATCT ACTGCTTCAC CCCGAGCGAT
GACTTTGCCA GTGCCTGCGA GTTCGCCGAC GCGGCGATGT ACCGGGTCAA GGCCCAGGGC
AAACACGACT ACCTGTTCTG GCAGGCCGAG CAAGCGGCCG AGGGCTAA
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| Protein sequence | MEPDEQPSNQ LANTEPSAET SAEPTADISA EQTADLIAKL KAENAALKRE NAKLTLLNDR
AEEKLFAALD GNRLCLWEQH LPSGNLTIFN MRWGELLGFS REELAAHVDS WKQNLHPEDK
EWVIKAFEDH VEGKSDYYQA VHRMIHKDGS VTWVSDRGRI VERKPDGTPL RMMGTHMDIT
QEKRYEQELS ELAHCDPLTN LSNRKAITLA FEELYQRGRG SIFFIDLDGF KELNDKLGHK
FGDHLLVHVA HTLRGVIGTQ AQIARLGGDE FLILHPSQDQ TLLSERAQSL LDVYRQAIIL
EGTEVKLGLS IGIYCFTPSD DFASACEFAD AAMYRVKAQG KHDYLFWQAE QAAEG
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