Gene Shew_3142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3142 
Symbol 
ID4922009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3735749 
End bp3736279 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content53% 
IMG OID640164752 
Producthypoxanthine phosphoribosyltransferase 
Protein accessionYP_001095267 
Protein GI127514070 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0634] Hypoxanthine-guanine phosphoribosyltransferase 
TIGRFAM ID[TIGR01203] hypoxanthine phosphoribosyltransferase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACA CTACCGAAGT GATGATCTCG GCAGATGAGA TTGAACAACA ACTGGATATC 
CTGGCAGCGC AGATCAATGC CCATTACGCC AATAGCGAAC GCCTGCTAAT GGTTGGCCTG
CTGAAGGGGT CTGTGGTCTT TATGGCCGAC CTCTGCCGCC GCATCAAGGG CCACGTTGAG
ATCGATTTCA TGTCGGTATC CAGCTACGGC AACGCCATGA CCAGTTCGCG CGACGTGAAG
ATCCTAAAGG ATGTGCAGTC GGATATCGAA GGCCGTGACG TGTTGATCGT CGAAGACCTG
ATCGATTCGG GTAATACCCT GAACAAGGTG CGCGAGATGC TATTGCTGCG CGAACCTAAG
AGCCTGGCCC TCTGCACCTT GCTGGACAAG CCAGAGCGCC GCGAGGTTGA TGTACCGGTA
GACTTTATCG GCTTCACCAT TCCCGATGAG TTTATCGTCG GCTATGGTAT CGACTATGCC
GAGCAGTATC GCAACCTGCC TTACATCGCT AAAGTCGTAC CCCTAGATTA A
 
Protein sequence
MKHTTEVMIS ADEIEQQLDI LAAQINAHYA NSERLLMVGL LKGSVVFMAD LCRRIKGHVE 
IDFMSVSSYG NAMTSSRDVK ILKDVQSDIE GRDVLIVEDL IDSGNTLNKV REMLLLREPK
SLALCTLLDK PERREVDVPV DFIGFTIPDE FIVGYGIDYA EQYRNLPYIA KVVPLD