| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3126 |
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| Symbol | |
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| ID | 4922089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3718384 |
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| End bp | 3718914 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164736 |
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| Product | 2'-5' RNA ligase |
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| Protein accession | YP_001095251 |
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| Protein GI | 127514054 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1514] 2'-5' RNA ligase |
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| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0151301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACGAC TCTTTCTCGC CATCGCCCCC GATGCGGCGC AGCTGGAGCA ACTGACCCAG
TTACAGGCGA GCTTAGACGG TGAGGGACGC CTTGTCCCCA GAGACAATCT GCACATGACG
CTGGCCTTTC TCGGCCAGTG CAGCGAGGCC CAGCAGGAGG CGCTGAGCGA GTCCCTCGCC
CGGCTCGCCC ATCAACGCCG TCTGCCGACA TTTGAGGTGA CGCTCAACAC TCTGGAGCAT
TGGGTTAAAC CCAAGATCCT CTGCCTCAAG GGCGCGGCGC GGGATCCCGG GCTTATCAGC
CTGTTCAATC AATGCCAACG TCTGGCCCAG CAGCTCGGGT TACACACCAG CGAGCACAGC
TTCACGCCCC ACATCACCCT GATGCGTAAG GCCAAGATGC TGCCCGAACT CAAGGCGCCC
AGCCTCTCCC TCAGCGGCCA TGCCCTGCAT CTGTATCACT CTCAGAGTAG CGAGCAGGGG
GTGCTGTATA AGGTATTGGC TTCCTGGCCG CTCACGGCCC CAAAAGCATA A
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| Protein sequence | MKRLFLAIAP DAAQLEQLTQ LQASLDGEGR LVPRDNLHMT LAFLGQCSEA QQEALSESLA
RLAHQRRLPT FEVTLNTLEH WVKPKILCLK GAARDPGLIS LFNQCQRLAQ QLGLHTSEHS
FTPHITLMRK AKMLPELKAP SLSLSGHALH LYHSQSSEQG VLYKVLASWP LTAPKA
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