| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3125 |
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| Symbol | |
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| ID | 4922088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3715952 |
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| End bp | 3718147 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164735 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001095250 |
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| Protein GI | 127514053 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00840861 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCATCCG ATACGCAACA GGGATCCCAA TCGCTCGAGC AGACGCTCGC TTTTTTATGC
GAACACGATC TGGAAGAGGA GCTGCAACTT ATCCTGCAGC AACTTGCCGC CAGCAATCAG
TGTGATGGCC TGTTTCTGTT ACGTATTGGC AAGGGCCGTC TGCCGGTGCA GATCGAAGCC
ATGTACCAGT CCGATGCCTC TATCTTCAGC AAGCGCGACG CCGAGATGCT GCTCAGCCGG
GTGGCTAACA ACCGTCATCT ACACTCCTAT ACCTCACTGC GTGAACCTGC CATCGTCGAA
GATGTCGCTT CCGTTATCGA CGACGAGGAC AGCCGCCTGC GTCTGAATCA GGCCAAGATC
CGCAGCGTCC TGCTGTTGCC CGTGGGCGGA GAGAGGCACT ATATCTTCGG CGCCTATCGC
TACGACTGTG ACGGTGTTTG GCTAGAGGCG ATTCGTCTTA ACCTGCTGCT GGCCGGCAGC
CTGCTGGGCC TGGCGCAGGA GGCGGCGCGC CAGCGCTTAA ATGCCAAGAG TAACGAGCTG
GTCTGTATCG AGCATCTCTA TCGCCTGCCC ATCCCCTGCG TGCATATCGG CGTGGATGAC
AGGGTGATAC GTTACAACCA GAGCGCCGCC GAGAGTCTGC ATGTGGAGAC GCTACAGAAG
GTGGAGACCT TGGTACCCAA GCGAGAGCAG AAACACCTGC TGGACACCAT GGCGCTGGTG
CGAGACCAGG TGCTGGAGCA GTCCAGTTGT GAGGTACCGC TGAAATACGC CCCCGATGAT
GCCCAGGCCA AGGTGACCTT CCTCTGCCTG TCCGGTGAAG ACGGCCCCAT CCTCATGCTG
GTGGAGCCTG TGGGCGAGCC GGTTCAGGAG AGTGAGGCGC ACAGTGTTTC GCTCAATTTC
GACCCGCTCA CCGGGCTGCC CAATCGCGCC TATTTCGAGG CCCTGTATGA CCTGGCCAAC
CCCTGCCAGT GCGAGCGCTC TACCTTTGTG GGGTTCATCA ACCTGGACAG ATTCCAGGTG
GTTAATAATG TCAGCGGCCA CAGGGCCGGC GATCAACTCT TGTGTCAGCT CGCCGCCCGC
CTGAGTCAGC TGGTGCGCAA GGAGGATGTG ATCGCCCGCC TCAGTGGTGA CGAGTTTGGC
ATACTAATGC CCAATATCGA TGTGCAGATC GCCGAGCAGG TGGCCGAGCG TATCTGTCAG
GCGATGGCCA ACCACGAATT TAGCTGGGAG GGGCGTAGCC ATAGCGTGAG CGTCTCCATG
GGGCTGGCCC GCTGCGAGAG CGAGGTCGAC TCTGTCTCTG ATCTCTTGCG CCGCGCCAGC
GCCGCCTGTC GTCTCGCCAA GGAGAAGGGC GGTAACGCCT GGTACTTCTA TAGCACCCAG
GATCCTGTGG TGGAGAAGCT CAATACCGAG ATGAGCGCCT CGGTGGATAT CGTCGGCGCC
CTGGCCAACG ACAGGTTCGA GCTCTTCTAT CAGCCCATAG AGCCGTTGTA CGCTAGTGAC
GACGGCTTGC ATCTGGAGAT CTTGCTGCGC ATGCGCTCCA CCGAGGGCGA GCTGATTCCG
CCGGGGATCT TCCTGCCCGC CGCCGAGCGC TTTAACCTAG CGGCCAAGCT GGATCGCTGG
GTGATCGACA AGCTGCTGCG CTGGGGCAGT GAAAACCTAG CGCTATGGCA ATCTCTCTCC
ATGGTGTCGG TGAACCTGTC GGCGCTCTCC ATCAGCGACA GCGAGTTTAT CAACTGGCTG
GAGATGCGCC TGCTGGGCGA GCCCGAACTG GTGAGTAAGC TCTGCTTCGA GATCACCGAG
ACGGCGGCGG TGAGTCAGCT GGATCATGCC ACCGGGCTGA TCAACACTGT GAAGCCTCTG
GGCTGTAAGC TGGCGCTGGA TGATTTCGGC TCTGGCTTCT CAAGCTTTGC CTACCTTAAG
CTGCTGGACG TGGATTATGT GAAGATCGAT GGTCAGTTTA TCCAACACCT GTGCGAGGAT
CGCGCCGATC AGGCGATCGT CGCCGCCATC TGCCAGCTGG GCCGCGACAT GGCGTTCGAG
ATAGTGGCCG AGTTTGTCGA GTCGGTCGAG GTGGCAAAAC ATCTGCAGAA ACTGGGCGTC
GAGTTTGGCC AGGGCTACGG CATCGCGCGT CCCGAGTCGC TCACTTCACT GACCTCGGGT
GAAGGCCTGC ACTGGTATCG GGTGCTGGAA GGTTAA
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| Protein sequence | MSSDTQQGSQ SLEQTLAFLC EHDLEEELQL ILQQLAASNQ CDGLFLLRIG KGRLPVQIEA
MYQSDASIFS KRDAEMLLSR VANNRHLHSY TSLREPAIVE DVASVIDDED SRLRLNQAKI
RSVLLLPVGG ERHYIFGAYR YDCDGVWLEA IRLNLLLAGS LLGLAQEAAR QRLNAKSNEL
VCIEHLYRLP IPCVHIGVDD RVIRYNQSAA ESLHVETLQK VETLVPKREQ KHLLDTMALV
RDQVLEQSSC EVPLKYAPDD AQAKVTFLCL SGEDGPILML VEPVGEPVQE SEAHSVSLNF
DPLTGLPNRA YFEALYDLAN PCQCERSTFV GFINLDRFQV VNNVSGHRAG DQLLCQLAAR
LSQLVRKEDV IARLSGDEFG ILMPNIDVQI AEQVAERICQ AMANHEFSWE GRSHSVSVSM
GLARCESEVD SVSDLLRRAS AACRLAKEKG GNAWYFYSTQ DPVVEKLNTE MSASVDIVGA
LANDRFELFY QPIEPLYASD DGLHLEILLR MRSTEGELIP PGIFLPAAER FNLAAKLDRW
VIDKLLRWGS ENLALWQSLS MVSVNLSALS ISDSEFINWL EMRLLGEPEL VSKLCFEITE
TAAVSQLDHA TGLINTVKPL GCKLALDDFG SGFSSFAYLK LLDVDYVKID GQFIQHLCED
RADQAIVAAI CQLGRDMAFE IVAEFVESVE VAKHLQKLGV EFGQGYGIAR PESLTSLTSG
EGLHWYRVLE G
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