| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3123 |
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| Symbol | |
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| ID | 4922086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3710930 |
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| End bp | 3713299 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164733 |
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| Product | penicillin-binding protein 1B |
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| Protein accession | YP_001095248 |
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| Protein GI | 127514051 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000774308 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACGAATA AAGAGACGCC AACACCACGC AGACCGCGCA AGTCGACTAA TAGTAAGGCG
GGCAATAGCC AATCGTCTAA GCGTAAGTCG GCGAGCAAGA GTACCGCGAC AGCGAGGCCG
GGTTGGGGCC GTAGGATCTG GTCTTTGAGC TGGAAGCTCG GTCTTATCCT GTTTGCCGCC
ATGACCATCT ATAGCATCTA CCTGGATCAG ATCATCGCCC GCAAGTTTGA GGGGCAGAAG
TGGCATCTGC CGGCGCAGGT ATTTAGCCGC TCCATGGCCC TCTATCCCGG CGCGGCCGTG
AGCCACGATC AGCTGATCGC CGAGCTTAAG CTGCTGGGTT ATCGCAAGGT GGCCAATCCC
CGTCAGGTGG GCGAGTTTTC CGCCTCCAAG ACCAAGGTGG ATCTCTGGCG CCGCCCCTTC
CTCCATCCTC AGGGATCTCA GGAAGCCCAG CGGATGATGA TCAGCTTCGA CAGCCAAGGG
GTTGCCTCGG TGGCCCGCAG CAGTGACCAT CGCGAGCTGG CGGTGTTCCA CCTCGAGCCC
GTGCTGCTGG ATCGCATGAT CACCGGCGAT GGTGAAGACA GGCTGTTCGT GGCCACAGAC
AAGATACCCA AGGCGATCGT CGATGCGCTG ATCCTGGTGG AAGACAGGAG CTTCTATGAA
CATCATGGCG TCAATCCCTT TGCCATCATA CGCGCCGCCA TGGTCAACAT CAGCGCCGGA
CGCACGGTAC AAGGCGGCTC GACCCTGACT CAGCAGCTGG CGAAAAACTT CTTCCTCTCC
AGCGAGCGCT CTATCATACG TAAGCTCAGG GAAGCCCTGA TGGCGATCAT TATTGATTTT
CGCTACGACA AGGATGAGAT CCTCGAGGCC TACCTCAACG AGGTCTACAT GGGCCAGGAC
AAGTCCCGCG CCGTGCACGG CATGGGGCTG GCGTCTCAGT TCTATTTCGG CCGACCGATC
GCCGAGCTGA CTCTGCCGCA GCAGGCCTTC CTGGTGGCGG CGATAAAGGG GCCTTCCTAC
TACAACCCTT GGCGTTTCCC CGAGCGGGCT CAGGAGCGAC GGGATCTGGT GCTGCGCCTC
TTGATGGAGT CGGGCCAGCT GCCGGTGGCA CAATACAAGG CGGCGGTCGA ATCCCCCCTT
GGGGTGCGTA AGGCGAGCAA GCCTGTGCAT CAGAAACTGC CAGCCTTCTT CGCCGTGGTG
CGCGGTGAGC TGTCGCGTCG ATTCGGTGAT AGCCTGCTCC AGCAGTCGGG CATCAAGGTC
TACACCACCT TAGATCCCCT GGCCCAGGAG GCGGCGGAGC AGGCGGTGCG CTCGACCATG
AAAAACCTGG AGCAGCGTGA CAAGGCGTTG CAGGTGGGCA TGGTGGTGAC CGACAAGTAC
TCGGCGGGTA TCGCCGCCAT GGTGGGCGAC AAGGTGCCAA GCTATCAGGG CTTTAACCGC
GCGGTGGAGA TCCGTCGTCC TATCGGTTCG CTTATCAAGC CCTTTGTCTA TGCTACGGCG
CTGACCCACG GTGACAAGTA CACCTTGGCG ACGCCGCTGA AGGATGAGCC GATCACCCTT
ACCAACTCCC AGGGCAAGAC CTGGTCGCCA CAGAACGTCA ACAAGCAGTT CTCCGGCGAG
GTGCCGCTGA TGACCGCCTT CAAGAAGTCG ATGAACGTGC CGACGGTGAA CCTCGGCATG
GCGATAGGTA CAGACGCGGT GGCGACCACC CTGGCCAAGT CGGGCTGGGA CGAGACCATC
CCAGAGTATC CGTCCATGTT GCTGGGGGCC GTCAATGGCT CGCCGCTGAT GGTGGCGCAG
GTGTACCAGA CTCTGGCAGA TAATGGCCGC TACCGTCAGC TAAATGCGGT GACCCATGTG
CTGGATGCCG ACAATCAGCC TCTATCGGCC AGTCAACGCG GCGCGGATCA GGCGATCTCT
GTTGCCAGCG ATTTTCTGGT GCAACACGCC ATGACTCAGG TGGTGCAGTC GGGCACGGCA
ACTAAGCTGG GCCAGGCCTT CCCTGGGGTA ACCCTGGCGG GTAAGACGGG CACCAGTAAC
GATTCCCGCG ACTCCTGGTT TGCCGGGTTC GACGAGCGTA ACGTGGCCGC CGTCTGGGTG
GGGCTGGACG ATAACGGCAA GACCAGCCTC TATGGCAGCA GCGGCGCCAT GGCCGTCTAC
CAGGCCTTCC TCAAGCAGCG CGCGCCTATC AGCCTGAGAC GCACGCCGGT CAATGGCGTG
GTGTCTGGCT ATTTCGATGC CAAGACGGGT GTCGCCAAAC AGGGCAACTG CGGCAATGTG
GTGGCGGTGC CAGCCCTGGC TGAGAGCTAT CGCCCGGCCA AGAACTGCGG CGAGCCCCTC
TCCTGGTGGC AGAAGTTGAT GGGCGGTTAA
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| Protein sequence | MTNKETPTPR RPRKSTNSKA GNSQSSKRKS ASKSTATARP GWGRRIWSLS WKLGLILFAA
MTIYSIYLDQ IIARKFEGQK WHLPAQVFSR SMALYPGAAV SHDQLIAELK LLGYRKVANP
RQVGEFSASK TKVDLWRRPF LHPQGSQEAQ RMMISFDSQG VASVARSSDH RELAVFHLEP
VLLDRMITGD GEDRLFVATD KIPKAIVDAL ILVEDRSFYE HHGVNPFAII RAAMVNISAG
RTVQGGSTLT QQLAKNFFLS SERSIIRKLR EALMAIIIDF RYDKDEILEA YLNEVYMGQD
KSRAVHGMGL ASQFYFGRPI AELTLPQQAF LVAAIKGPSY YNPWRFPERA QERRDLVLRL
LMESGQLPVA QYKAAVESPL GVRKASKPVH QKLPAFFAVV RGELSRRFGD SLLQQSGIKV
YTTLDPLAQE AAEQAVRSTM KNLEQRDKAL QVGMVVTDKY SAGIAAMVGD KVPSYQGFNR
AVEIRRPIGS LIKPFVYATA LTHGDKYTLA TPLKDEPITL TNSQGKTWSP QNVNKQFSGE
VPLMTAFKKS MNVPTVNLGM AIGTDAVATT LAKSGWDETI PEYPSMLLGA VNGSPLMVAQ
VYQTLADNGR YRQLNAVTHV LDADNQPLSA SQRGADQAIS VASDFLVQHA MTQVVQSGTA
TKLGQAFPGV TLAGKTGTSN DSRDSWFAGF DERNVAAVWV GLDDNGKTSL YGSSGAMAVY
QAFLKQRAPI SLRRTPVNGV VSGYFDAKTG VAKQGNCGNV VAVPALAESY RPAKNCGEPL
SWWQKLMGG
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