| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3118 |
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| Symbol | |
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| ID | 4922081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3702599 |
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| End bp | 3706270 |
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| Gene Length | 3672 bp |
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| Protein Length | 1223 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164728 |
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| Product | hypothetical protein |
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| Protein accession | YP_001095243 |
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| Protein GI | 127514046 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.105944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000130275 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGCCAAGCT TAAATCGTAT CGTGCTGATC AATACGCACC TCCCCGGCGT TGTGGAACTC
GCCCTCGATG GACACACCAA CATTTGTGGT ACCAACGCCT CGGGCAAGAC CACCTTGCAG
CGTCTGGTGC CCGTGTTTTA CGGCGAATAC CCCAGCCGCG TCGTGCCCTC GACCCGTGAC
AGCTTCGAGC GTTGGTATCT GCCCCACGAT TCCAGCTACA TTATCTACGA GTATCGCCGC
GACGATGGCC TGCTGACCCA GGCGGTGCTG GCCTCTGCCG GTGATGGCAA GGGCGTCAAC
TATCGCTTCA TCGGCAAAGG CTTTGAGCTG GAAGACTATG TGAAGTCACA GCAGGGGGAG
TCGATTCTCT GCCATAACAT GGCCGAGCTG GGACGTGAGA TGAAACGCGC CGGGGTGGCG
GTAACCAACC TGCTAAATAC CCGCGAATAT CGCGCCATCA TCCAAAACGA TCGCACCCTG
CTAAGCACCG GCAGCAACCG CAGCGAGCTG AGGGCCTACG CCCGCCAGTT CTCCCTGTGT
CAGCACGAAC ACACGCTGCG CCACATAGAG AAGTTGGCCA AGGCGGTGCA CTCCAAAGAA
GGCAAGATGG AGACCATCAA GTCGATGATC GCCGCCATCC TGGAGGAGGA TGGGGTTAAC
CCGCCGAGCT CACGCCTCAA CCCGCAGCGG GTCGAGGCTT GGATCCGCGA GAGCCAGCTG
ATCCAGGGCT TCGAGCAGAT CCGCCCCGAA TTTGACAAGT TGGAGCAGGA GTTTAACCAA
CTGCTGAGCG CGGAGCAGCG TCTGGCCGGC CTGAAGCGCG GCTATGGCAA GGATGAGGCC
CAGGAGATAG AGCGTCAGGA GCTAAATCAG CAGCGCTCGA AAGATCTCGG CAACAAGCTG
CGTCAGCTCG ACGACGAGTG GAAGGAGCTG CGCGACGAGC TTAACCTGGA TCTCTCTGCC
GCCAAGGGCG ACGTGGCCAA GATAGAGCAT GAGCTGGATA TCATAGAAGA TCAGCACGCA
GGTTTTCTCG ATGCCGATAT CGAGCAGGCC AAACTGGATC TTGAGCAGCT GCCCAGCTGG
CGTGCCAGCC TGGAGAACCT GACCGAGCGT CATAAGCTGC AAACCGAGAA GCACCAGGAT
ATCGAGGCGG CCTACAACGC CCGTCGCAGC AAGATAGGCG AGAACCTCAA CCGCGAGCTG
GAGCAGCTAG ATAAGGAACA AGATAAGCAT CGTGAAGCCA GAGACAAGCA GCAGGAGGTG
GGCCGTGAGG AGCTGGCCGC CCTCGAGCAA AGCTGGCGTG AGCAGATGGA GGCGGGCCGC
GCCAAGCACA ACGAGCAGGA ATACCAGCTC AAGCTGACGG CGGCCGAGCT GCAGATGCAG
GTCAACGGCG TCACCTACAG CGAAGAAGAG AAGCTGACCC TGGCGGTGTT TGATGAGCGC
ATCTCCCGCG CCGACGAGGA GCAGGAGGCG TGCAACGCCA TGGTGGATCG CCTGGCAGGC
GAGGAGCGCA AGCTCAGAGC CAAGCGGGAT CAGGCCAACG AGAGCCTGAG ACAGGCAGGG
CTAAGGGTCA TCGAGCGTCA GGGCGCGCTG GATGAGCTGC ATCAGGTGCT CTTCCCTCAG
TCTCATACCC TGCTTGAGTA CCTGCGCAAG GAGGTCGACG GCTGGGAGGA GAGCATAGGC
AAGCTGATAA ACCCTGAACT ACTACATCGC AGTGATCTGC ACCCTGCCAA GTCGGCCGGC
GGCGACAGCT TCTGCGGCGT CGAGCTGGAT CTCAAGGCGC TGACCACCCC AGAATATGCC
GCCTCGGAGC AGGAGCTCAG GGGCCGTTAC AGTGAGGCCG AGGAGGCGCT GGCCAATGCC
AAGCAGCTAC AGGCCGAGGC AGAAGAGGCC CTGGTAGCCA TCAACGCCGA GCTGGATAAG
CTTAATCGCG AACTCACCTT CGCCAAGACG GCCTACAAAA ATAGCCGCGA CGATCTGCGC
CGCCTGTTTG ACGAGAAGCG TGCCGAGCAG GAGAAGATCA ATCAGGCGCT GAGCGCTCGC
AAGGCAGATT CGCAGAAGCG TCTTGCCCGT CTCGACAGCG AGATGAAACA GCTCAAGGCT
CAGCACCAGG AGTGGATCGA TGAGCAAAAC GAGCAGGCGC TCGAGGCGCG CATGGAGAAG
AAGGCCTACT GGCAGGAAGT GGTTGGTGCA TTGGATGTTC AGCTCTCCCA GGTGAAGCAG
AATATTAACG ATCGCCGTCA TGCGGCCAAG ACGGAGCAGA AGGCCTGCGA GCAGTGGTAT
AAGGATGAGC TGAAATCCCG CGGCGTCGAC GAAGCCAAGA TAGTCAAGCT CAAGCAGGAG
ATCCGCGATC TGGAGAGCAG CATCAGCAAG GCGGAGCAGC GCCGCAGCGA AGTATTGCGT
TTCGACGACT GGTATCAACA CACCTGGCTC GCGCGCAAGC CTAAGCTGCA GACCGAACTG
AGCCAGGTCA AGATGGCGGT GACCGAGCTG AGTCAACAGC TCACCACCAA GGCCAACGAG
ATTAAACATC AGCGTCAGCA ATATGATAGC GAGCGCAAAC AGTCTGACGC CATCCAGGTG
GAGGCCTCGG AGAACCTGAC CAAGCTGCGC GCCGTGATGC GCAAGCTGGC CGAGCTGAAA
CTGCCATCGA GCCAGGATGA GATGCAAGGT GGTCTCACCG AGCGTCTGCG TCAGGGCGAA
GAGTTATTGC TGCGCCGGGA CCAGTTGATG GGCTCGGTGA AGCAGTATAT CGAGCATTTC
GACTCGGTGA TCGCCAGCAA GTCGGGTTCC AGTCTGTCAG AGACTTGGGA GCGCGCCCGC
GAGGAGTCTA GCTTCGTCAA CGACAAGGGC ATTCGCCTGC TGGACTATCG CAAGCTGGTA
CCGCAACTGG AGCAGCTGCT CAACGTCATG GTGCCTCAGG CGATCATGGG CCTGAGAGAG
CAGGGGCGTA ACTTCGGTAT CGACCTGACG GCATTCTACG ACGTGCTGGC GGATATCGAC
CGCCGCATCG CCTCCCAGAG TGCCCGCATC ACCCGCGAGG TGGGTGAAGA GCTGTTCCTC
GACGGGGTGA GCGAGTCGGC GGTGCGCATC CGTTCGCGCA TCAGCGAGCT GGAGTTCTGG
CCCGAGCTGG AGGAGTTCGT CAAGGCATTT AAACAGTGGA AGGCCGAGGG CTTCGCCGAC
TTGCCGGACG AGCACTACAC CAGCAGCATG CGCCGCGCCC TGGATATTAT TGGCCGCGCC
GCCCTGACCG GCGGTATCGC CAAGCTGCTG GAGATCGAAC TGCGCCTCAA GGAGGGTAAC
AGTGATCTAG TGATCCGCAC CGACCGCCAG CTCAACGAGT CTTCGAGCCA TGGTATGGCC
TACCTGATCT TGTGTAAGTT CCTGTTGGCC TTCACCCGTC TGCTGCGTGG CCGCGCCGAC
GTGACCATTC ACTGGCCGAT CGACGAGCTG GGCACCCTGC ACCACGGCAA CGTGAAGAAG
ATCTTCGATG CCTGTGAGAA CAACAATATC TCGGTATTGG GCGCCTTCCC GAACCCTGAG
TCTGAGGTGC TTAACCTGTT TGCCAACAGA TACATCATCA ACAAGCAAAC CAAGAAATTA
CAAGTGGTTA AGCCACAAGT TAACCCCATT GCCGATAAGC TGAGCCAGCG TTTTGCCAAG
GAGGCTGTGT AA
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| Protein sequence | MPSLNRIVLI NTHLPGVVEL ALDGHTNICG TNASGKTTLQ RLVPVFYGEY PSRVVPSTRD
SFERWYLPHD SSYIIYEYRR DDGLLTQAVL ASAGDGKGVN YRFIGKGFEL EDYVKSQQGE
SILCHNMAEL GREMKRAGVA VTNLLNTREY RAIIQNDRTL LSTGSNRSEL RAYARQFSLC
QHEHTLRHIE KLAKAVHSKE GKMETIKSMI AAILEEDGVN PPSSRLNPQR VEAWIRESQL
IQGFEQIRPE FDKLEQEFNQ LLSAEQRLAG LKRGYGKDEA QEIERQELNQ QRSKDLGNKL
RQLDDEWKEL RDELNLDLSA AKGDVAKIEH ELDIIEDQHA GFLDADIEQA KLDLEQLPSW
RASLENLTER HKLQTEKHQD IEAAYNARRS KIGENLNREL EQLDKEQDKH REARDKQQEV
GREELAALEQ SWREQMEAGR AKHNEQEYQL KLTAAELQMQ VNGVTYSEEE KLTLAVFDER
ISRADEEQEA CNAMVDRLAG EERKLRAKRD QANESLRQAG LRVIERQGAL DELHQVLFPQ
SHTLLEYLRK EVDGWEESIG KLINPELLHR SDLHPAKSAG GDSFCGVELD LKALTTPEYA
ASEQELRGRY SEAEEALANA KQLQAEAEEA LVAINAELDK LNRELTFAKT AYKNSRDDLR
RLFDEKRAEQ EKINQALSAR KADSQKRLAR LDSEMKQLKA QHQEWIDEQN EQALEARMEK
KAYWQEVVGA LDVQLSQVKQ NINDRRHAAK TEQKACEQWY KDELKSRGVD EAKIVKLKQE
IRDLESSISK AEQRRSEVLR FDDWYQHTWL ARKPKLQTEL SQVKMAVTEL SQQLTTKANE
IKHQRQQYDS ERKQSDAIQV EASENLTKLR AVMRKLAELK LPSSQDEMQG GLTERLRQGE
ELLLRRDQLM GSVKQYIEHF DSVIASKSGS SLSETWERAR EESSFVNDKG IRLLDYRKLV
PQLEQLLNVM VPQAIMGLRE QGRNFGIDLT AFYDVLADID RRIASQSARI TREVGEELFL
DGVSESAVRI RSRISELEFW PELEEFVKAF KQWKAEGFAD LPDEHYTSSM RRALDIIGRA
ALTGGIAKLL EIELRLKEGN SDLVIRTDRQ LNESSSHGMA YLILCKFLLA FTRLLRGRAD
VTIHWPIDEL GTLHHGNVKK IFDACENNNI SVLGAFPNPE SEVLNLFANR YIINKQTKKL
QVVKPQVNPI ADKLSQRFAK EAV
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