| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3115 |
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| Symbol | |
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| ID | 4922220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3698873 |
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| End bp | 3700186 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164725 |
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| Product | sodium:dicarboxylate symporter |
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| Protein accession | YP_001095240 |
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| Protein GI | 127514043 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000818363 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAGAAGA AAAAAGCGCA CGATAGATGC GCAACAAAAC AAGGCAAGCA TATGACTAAA
TCACTTTCTA CGCGCATCTT TATCGGCCTC TTTTCTGGCC TGATTCTGGG GAGCATCATT
CAATATTTCT TGGCCGATGT CGGGTTCTTC TCCGGCACCC TGGTCGAGGT CGCTTCAGGC
TTAGGTACCA TGTTCGTCAA CATGATCATG ATGATGGTGG TGCCCCTGGT CTTCGTCAGC
ATCGTCTGCG GCGTGCTGGA GCTCGACGAT CTCAAGAGCT TTGGTCGCCT CGGCGGCAAG
ACCTTCGGTT TCTACATCAT CAACACCCTG GTGGCCATCT TCGCCGCCCT GACCGTAGCC
CTACTGCTTA AGCCGGGACT CGGGGTCGAC ATGACGGGGG GCACGGGCGC CGAGATCACT
GCTACCGAGC TGCCTAACCT GATGCAGCTG ATCGTCAACA TAGTGCCGAG TAACCCGGTA
GCCGCCTTCA CCTCGGGCAA CATGCTGCAG GTGATCTTCA TGGCGCTGCT GGTCGGTGGT
GTCATCAAGG CGATGAATGG TGCCGTGCCG CTACTGCAAC AGGGCTTTAT GGAAGGCAAC
AAGCTGATGA TGAAGCTTAT CGGCGTGGTA ATGCAGCTGG CGCCTATCGG TGTGTTTGCG
CTGATGTTTA AGCTGGGTGC GACCCTGGAG GCGAGCCTGT TTCTCAGCGT GGTCGAATAC
CTGGTGGTGA TCTTAAGCCT GCTACTCCTG TGGATCTTCG TGGTCTACCC TTGGGCGGTG
AGCCTGTTTA CCCCTGTGTC TGCTAAGACC TTCCGCGCCA AGACCCAGGA GCAGATTCTG
TTCTCTCTGT CGACCGCCAG CTCGAATGCC ACCATTCCTG TCACCATGCG TACCCTGACC
GAGAAGCTGG GCGTGAAGCG CGCCGTGGCC GGTTTCGGCG TGCCGCTGGG GGCGACCATG
AACATGGGCG GCGTCTCTAT CTATATCACC ATCGCCATCT TCTTCGTGGC TAACTCCTTC
GGCGCTCCTA TCGCCATGGA TCAGCTGCCC GCCCTGCTGT TTAGCATCTT CCTGTTGTCT
GTTGGCGCCG GCGGCGTGCC AGGCGGTGGC ATGGTGATGA TCGGCGTGCT GATCCACCAG
ATGGGTCTGC CAGTCGAGGC CTTCGTGATT GTCGCGGCGC TGGATAGACT GATCGACATG
GTACTGACCT CTTGTAACGT CGTGGGTGAC GCCGCCGTGC TCACCATAGT CGACGCCACA
GAGAATGCCC ATGACGAGGC GCAAGAAGAA GCGCGTCAGC AGCAGACGGC CTAA
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| Protein sequence | MEKKKAHDRC ATKQGKHMTK SLSTRIFIGL FSGLILGSII QYFLADVGFF SGTLVEVASG
LGTMFVNMIM MMVVPLVFVS IVCGVLELDD LKSFGRLGGK TFGFYIINTL VAIFAALTVA
LLLKPGLGVD MTGGTGAEIT ATELPNLMQL IVNIVPSNPV AAFTSGNMLQ VIFMALLVGG
VIKAMNGAVP LLQQGFMEGN KLMMKLIGVV MQLAPIGVFA LMFKLGATLE ASLFLSVVEY
LVVILSLLLL WIFVVYPWAV SLFTPVSAKT FRAKTQEQIL FSLSTASSNA TIPVTMRTLT
EKLGVKRAVA GFGVPLGATM NMGGVSIYIT IAIFFVANSF GAPIAMDQLP ALLFSIFLLS
VGAGGVPGGG MVMIGVLIHQ MGLPVEAFVI VAALDRLIDM VLTSCNVVGD AAVLTIVDAT
ENAHDEAQEE ARQQQTA
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