| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3114 |
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| Symbol | |
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| ID | 4922219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3697423 |
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| End bp | 3698811 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164724 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001095239 |
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| Protein GI | 127514042 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000842018 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACTTG CACGCAATAT CCTATTGGTC GACGACGAGG CCTCCTGGCT GCGCACCCTG
GCGGTGACCC TCAACCGTCT GGTGCCCGAG GCAGAGATAG ACACCTGCGT CGACAGTCGC
CAGGTACTCA ATCGCCTGCA GGTGGGCGAC TATGCTCTGG TGCTGCTGGA CCTCACTATG
CCCTTCCACT CAGGTGAAGA ACTGCTAGGG ATGATCCGCG CCGAACACCC CAACACCCGG
GTGATCATAG TCACGGGCGT CAACGAGGTG GATACCGCGG TGCGCTGCAT CAAGCATGGC
GCCTACGACT ACTTCATCAA GACAGACAAT GTCAGCGACC TGGCCCATAC GGTGCGCCGC
GCGCTCGAGG TGGTGGGGCT TGAGCGCAAC TATCTGCATA TCAAGGAGCG CTTTCTCAGC
CGCACCTTGG ACAACCCCAA GGCCTTCAAC AACATACTCA CCTGTGAACC GGTGCTGCTG
GATCAGTTTC GCTATCTCGA GGCCGTCGCC TTCAGCCCAG AGCCTCTGTT GATCCACGGC
GAGAGCGGTA CCGGCAAGAG CGAGTTTGCC CGCTCCTGCC ATCAGCTCTT CAGCCCTGAG
CAACCCTTCG TCAGCCTCAA CCTTGCGGGC ATCAACAGCG ACACCTTCGA GCTTAAGCTG
TGTGGCCGCC TTAGTCATAA GCCAAACGGT GAGGTCGATG CGGTTACCGG CATGCTCCAT
CAGGCAGGCA GTGGCGTGCT TTACCTGAGC GAGATAGGCG CCCTGCCCCT GAGCGCCCAG
ATCACCTTGC TGGAGCTAAT CGAGAGCCGA AGCTACTCGC CCCAGGGCAG CGACAGCCGT
TTCCCCATCA AGTGTAAGTT TGTGGTCTCG ACCCAGGACG ATCTGCTGAC CCTCAACAAG
GCGGGTGAGT TTCGCAGCGA TCTCCTCTAC CGCCTGCGCG CCCATAAGAT AAGGCTGCCG
CGCCTGGCCG AGCGGCCGCT GGACATCGCC ATGCTGATCA ACCACTTCAT CGCCGAGGCC
GCCGAGGAGA TGTCCCTGAG CGCGCCGCAG CAACCCAGGG ATCTGGCACC TAAGCTGCTG
GATTACGACT TCCCCGGTAA CCTCAACGAG CTCAAGGGGA TGGTGTTCGA TGCCGTCAGC
CGCAGCGACG GCGTTACCCT CAATATCTCC CCCTTCATGG AGGCGATAAA GGAACATAAG
TCGCTGGACG CCGCCCCCGG GGATCACATC ATCTTCCCTA AGTCGCTGCC CACCCTGGCA
CAGATGAATC AGGCCTTGAT CGACGAGGCC ATGAGCCGCA CCGCCAACAA CCAGACCGCC
GCCGCGCAGA TACTGGGGAT CAGTCAGAGC GCTCTCAGCC GGCGCCTGAC CAAGGGGCAG
GAACACTAG
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| Protein sequence | MKLARNILLV DDEASWLRTL AVTLNRLVPE AEIDTCVDSR QVLNRLQVGD YALVLLDLTM
PFHSGEELLG MIRAEHPNTR VIIVTGVNEV DTAVRCIKHG AYDYFIKTDN VSDLAHTVRR
ALEVVGLERN YLHIKERFLS RTLDNPKAFN NILTCEPVLL DQFRYLEAVA FSPEPLLIHG
ESGTGKSEFA RSCHQLFSPE QPFVSLNLAG INSDTFELKL CGRLSHKPNG EVDAVTGMLH
QAGSGVLYLS EIGALPLSAQ ITLLELIESR SYSPQGSDSR FPIKCKFVVS TQDDLLTLNK
AGEFRSDLLY RLRAHKIRLP RLAERPLDIA MLINHFIAEA AEEMSLSAPQ QPRDLAPKLL
DYDFPGNLNE LKGMVFDAVS RSDGVTLNIS PFMEAIKEHK SLDAAPGDHI IFPKSLPTLA
QMNQALIDEA MSRTANNQTA AAQILGISQS ALSRRLTKGQ EH
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