| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3113 |
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| Symbol | |
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| ID | 4922218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3695449 |
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| End bp | 3697413 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164723 |
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| Product | histidine kinase |
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| Protein accession | YP_001095238 |
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| Protein GI | 127514041 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000907022 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACGCT TACTGCTCTG CCTTATCTTC TTCAGCTTTC CCGCACTATC GCAGGAGAGT
ATCGTCTTTG GCGTCCACTC GAAAACTGCG CCGCTGGAGT GGCGCAACAA CGGTGTGGAT
CAGGGTTTCA ACATAGAGTT GATGCACAGG ATCGGCCAGC TGACCGATAA GCGGATCATC
ATTCGCCGAA AGAGCTTTCA ACAGCTGGTG AAAGATGTGC ACAATCCGGG CAGCGACATC
GACGTGATCG CCGTGGTCAG CCCGGTAAAC CTGGATCGCA AGCTCAGCCA GTCCGATCCC
ATCTACGCCA CCCACGCCAA GGCCTATACC CTGCAAGGCA AGGCGCTGAT CAACAGCTGG
ACAGATCTGG TGGGCAAGCG GGTCGCCATC AAGAAGGGCG CCTTCGTCGA CGTCTACCTG
TCGGGCTACC CACAGAAATT CAACCGTGTC GATGTCGACC TGTATGAGAC CGGCTTTAAG
CAGCTGATCG AGGGCGAGGT CGACGTCGTG ATCGCCGAGA GCTTCGTGGC CCGCCGCCTG
CTGCCCCTCT ACCCCTCGGT GCGCAGCTCG AGCGATGCCC TCATCTATGG CGCCTTCAAC
TTCGTCTGCA ACGGCAAGAA AGCCGCCTTG ATGCAGGAGA TCAACGACGC CCTGCGCCAG
CTCAAGCTAT CTGGAGAGTA TGACCGCCTG GTCAACAAGT GGTTTGGTAC CGGCCGCGAG
AAGGTGGACC TGACCTCCAC CGAGAAGCGC ATGTTCTCCC TGGCTATCCT GGTGGCCATC
GTCTCGGCCA GCGGCATGAT CTATACCGGC TTCATCAGCG CCAGCCTGCG CAGACGTAAG
AAGGCCCTGG ACGCCGAGCT CATTCAACGT CGCCGGGTCG AGGCGGAGAT CTCCAACATC
TCCAAACAGT TTCAGTCGGT ATTAGACGGT ATTCCCCACG GCGTGACCAT AGTCAACCGC
GAGCTGCAAC GCCTGTGGAG TAACGACAAC AATGTGCATC TGCTAATCTC TGAGGACTTC
CATTACATAG ACGATCAAGC CTTCGATCTC AGGCCCGCCG TGCTGCAGGT GCTCAACGAG
CAGAAGTCGC TGATTGCCGA CATGATGTAT CTGGAGCAAT ATTGGCAGCT ACAGATCCAC
CCCATCGCCA ATGATCAGGT GGTGGTGCTG CTCGAAGAAT CCACCGAGCA GCACAAGCTA
CGTCAGGCCA ACGAAGAGGC CAGCCGTTTA GCATCGCTTG GGGAGCTGTC TGCCGGCATC
GCCCACGAGA TCAACAACCC GACTGGGCTG ATCCTGCACG CCATCTCGCT ATTTTCGGCG
GCCATCAAGG ACCTAAATCC GGCGGCCAAC TATTATCAGC AGCAGAACCC CTTCTGGCAG
ATCGCCGGGC TCGCGCCAAG CCAAGCCATG GAGGAGATGG CGGTGAGCAG CGACACCATA
GAGGAGGCCG CCAAGCGCAT CAGCCGTATC GTCAACGATC TCAAGCGCTA CGCCCTGCCT
AACCTCACCC AAGATCATAC GCTGGTCTGC CTCAACGAGG TGGTCGAGGT GGCACTGCGG
CTCACCGCTA ACCAGACCAA GACCCGGCAG GTGACTAAGC TGCTGCACCT CCCCAGTCCG
AGGATCATGG GGGATGCCCA GCAACTGCAT CAGGTGTTGA TCAACCTTAT CCAAAACGCC
TGTCATGCCT GTGCGGCCCA CGAAGGCAGC ATTCAGATCA GCACCCAGGT GAGTCAGGGG
CGGGCCCTGA TCAAGGTCAA CGACAACGGC TGCGGCATGG ACAGCGCCAC CCTAAAGCGT
ATCACAGAGC CCTTCTTCAC CACCCGACGC ACCGAGGGAG GCAGCGGCCT GGGCCTGTCG
GTCTGCAGCC GTATCATCAA AGAGCATCAG GGTCAGATGC AGATACACTC GGCGCCCGGT
AAGGGCACCC GTATCCAACT TAGTTTTGCC TTGGTTCAGG AGTAG
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| Protein sequence | MKRLLLCLIF FSFPALSQES IVFGVHSKTA PLEWRNNGVD QGFNIELMHR IGQLTDKRII
IRRKSFQQLV KDVHNPGSDI DVIAVVSPVN LDRKLSQSDP IYATHAKAYT LQGKALINSW
TDLVGKRVAI KKGAFVDVYL SGYPQKFNRV DVDLYETGFK QLIEGEVDVV IAESFVARRL
LPLYPSVRSS SDALIYGAFN FVCNGKKAAL MQEINDALRQ LKLSGEYDRL VNKWFGTGRE
KVDLTSTEKR MFSLAILVAI VSASGMIYTG FISASLRRRK KALDAELIQR RRVEAEISNI
SKQFQSVLDG IPHGVTIVNR ELQRLWSNDN NVHLLISEDF HYIDDQAFDL RPAVLQVLNE
QKSLIADMMY LEQYWQLQIH PIANDQVVVL LEESTEQHKL RQANEEASRL ASLGELSAGI
AHEINNPTGL ILHAISLFSA AIKDLNPAAN YYQQQNPFWQ IAGLAPSQAM EEMAVSSDTI
EEAAKRISRI VNDLKRYALP NLTQDHTLVC LNEVVEVALR LTANQTKTRQ VTKLLHLPSP
RIMGDAQQLH QVLINLIQNA CHACAAHEGS IQISTQVSQG RALIKVNDNG CGMDSATLKR
ITEPFFTTRR TEGGSGLGLS VCSRIIKEHQ GQMQIHSAPG KGTRIQLSFA LVQE
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