| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3112 |
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| Symbol | |
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| ID | 4922217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3693260 |
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| End bp | 3695050 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164722 |
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| Product | flavocytochrome c |
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| Protein accession | YP_001095237 |
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| Protein GI | 127514040 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000541974 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAGA TGAAACTTGC GGTTTGTCTA GCCACATTGA TGGGCACAGC CGGATTCATG
GGCAACGCCA TGGCAGCCGA CAACCTGGCT GATTTCCACG CCCAAAACCA AGAGTGTGAT
AGCTGTCACC AAGCAGATGG TGAGCTATCA AACGACAGCC TGACCTATGA AAATGCTCAG
TGTGTTTCTT GTCACGGTAC CCTAGCGGAA GTGGCTGAAA GCACTAAGCA TGAACACTAC
AACGCCCACG ATTCTCACTT CCCTGGTGAT GTTTCTTGTA CTTCTTGCCA CAGCGCACAC
GAAAAATCTA TGGTCTACTG TGACTCTTGC CATAGCTTCG ATTTCAACAT GCCTTATGCC
AAGAAGTGGG AACGTCACGA GCCAACTATC GCCGAACTGG CGAAAGACAA GGCAGAACGT
CAAGCGGCTC TTGCTAGCGC ACCTCGCGAT ACCGTTGACG TAGTGGTTGT AGGTTCAGGC
GGCGCAGGTT TCTCTGCCGC AGTATCGGCC CACGATAATG GCGCTAAAGT GATTCTGATC
GAGAAAGAGC CGGTTATCGG CGGTAACGCC AAGTTGGCAG CCGGTGGTAT GAACGCCGCT
TGGACCGATC AGCAAAAAGC GAAAAACATC AAAGATGACC CAGAGATCAT GTTTAAAGAC
ACCATGAAAG GTGGCCGTAA CATCAACGAT CCTGAGTTGG TTAAGATCCT TTCTTCTCAC
TCAAAAGGCT CTGTCGACTG GATGACTGGC ATGGGCGCCG ACTTAAGCGA CGTAGGCCGT
ATGGGTGGTG CTTCTGTTAA CCGTTCGCAC CGTCCTACAG GTGGTGCCGG TGTTGGCGCA
CACGTGGTAC AAGTACTTTA CGATAACGCG GTTAAGCGCA ACATCGATAT CCGCATGAAC
ACTCGCGGCG TTGAGATCCT CAAAGACGAC AGCGGTAAGG TGAAAGGTAT CCTGGTTAAG
GGTATGTACA AGGGTTACTA CTGGGTGAAA GCCGATGCAG TGATTCTGGC TACCGGTGGT
TTCGCTAAGA ACAACGAACG CGTGTCTAAG CTGGATCCTA AGCTGAAAGG CTTCGTATCG
ACTAACCAAC CAGGTGCAGT CGGTGACGGT ATCGACGTAG CAGCAAACGC TGGCGCGGCG
ATGAAAGACC TTGAATACAT CCAGGCTCAC CCAACCCTAT CTGTTAAAGG TGGTGTGATG
GTGACCGAAG CGGTTCGTGG TAACGGCGCT ATCCTGGTTA ACCGTGAAGG TAAGCGCTTC
GTCAACGAGA TCACTACTCG TGACAAGGCG GCTGCGGCAA TCCTTCAGCA AACTGGTAAG
TCTGCTTACC TGATCTTCGA TGATTCAGTA CGTAAGTCAC TGAAGAAGAT CGACAAGTAT
ATCGGCCTGG GCGTAGCACC TAGCGCAGAT AGTCTGGAGA AACTAGGCAA GCTGGAAGGT
ATCGATGGTA AGGCGTTGAC CGAGACTGTC GCTCGTTACA ACAGCTTCGT GACCAGTGGT
AAAGATGCCG ATTTCGAGCG TCCTAACCTG CCACGCGCAC TGAACGAAGG TAACTACTAT
GCCATCGAAG TGACTCCTGG TGTTCACCAC ACCATGGGCG GCGTGATGAT CGATACTAAG
GCCGAGGTAA TGGATGCCAA GAAACAGGTG ATTCCAGGCC TATACGGCGC GGGTGAAGTG
ACTGGTGGTG TTCACGGTGC AAACCGTCTT GGTGGTAACG CTATCTCTGA CATCATCACC
TTTGGTCGCC TAGCCGGTGA ACAAGCCGCT GATTACGCTA AGAAACACTA A
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| Protein sequence | MKKMKLAVCL ATLMGTAGFM GNAMAADNLA DFHAQNQECD SCHQADGELS NDSLTYENAQ
CVSCHGTLAE VAESTKHEHY NAHDSHFPGD VSCTSCHSAH EKSMVYCDSC HSFDFNMPYA
KKWERHEPTI AELAKDKAER QAALASAPRD TVDVVVVGSG GAGFSAAVSA HDNGAKVILI
EKEPVIGGNA KLAAGGMNAA WTDQQKAKNI KDDPEIMFKD TMKGGRNIND PELVKILSSH
SKGSVDWMTG MGADLSDVGR MGGASVNRSH RPTGGAGVGA HVVQVLYDNA VKRNIDIRMN
TRGVEILKDD SGKVKGILVK GMYKGYYWVK ADAVILATGG FAKNNERVSK LDPKLKGFVS
TNQPGAVGDG IDVAANAGAA MKDLEYIQAH PTLSVKGGVM VTEAVRGNGA ILVNREGKRF
VNEITTRDKA AAAILQQTGK SAYLIFDDSV RKSLKKIDKY IGLGVAPSAD SLEKLGKLEG
IDGKALTETV ARYNSFVTSG KDADFERPNL PRALNEGNYY AIEVTPGVHH TMGGVMIDTK
AEVMDAKKQV IPGLYGAGEV TGGVHGANRL GGNAISDIIT FGRLAGEQAA DYAKKH
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