| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3106 |
|---|
| Symbol | |
|---|
| ID | 4922211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3686070 |
|---|
| End bp | 3686741 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640164716 |
|---|
| Product | ThiJ/PfpI domain-containing protein |
|---|
| Protein accession | YP_001095231 |
|---|
| Protein GI | 127514034 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.424885 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TACTTATTTA TTTGACGAAC CACGCGACCC TAGGCGATAC CGATGAGGCC
AACGGCACCT TCGCCCCAGA ACTCACCCAC GCCCTGCATG AGCTATTAGC CGCAGGTTTG
GATTATGATC TGGTGTCAAT TAACGGCGGC AAGGCTCCCC TGTACGGCAC AGATATCGAA
GGCGATGAGA TTAACGCCTC TATGCTGCAA GACGCCGCTT TCATCAGCCG GGTCAACAAC
ACCATTCCAG CCTCACAGAT CGACATCCAA GAATACAGCG CCATCTACTA CCCCGGCGGA
TTTGGTCTAT TGTCGGATTT AGCCCATAAC CAGGAGGTTG CTCGTCTCAG TGCGGCGCAC
TACGAAAATG GCGGCGTCAT AGGCGCGGTC TGTCATGGGC CTGCCGGCCT GCTCCCCATC
ACCTTGAGCA CAGGGCAAAA ACTCATTGCC GATAAGTCTG TCACCGGCTT TACCCGCGAA
GAAGAGGTCG ACTACGGTAC TATCGATAAA ATCCCCTTCC TGCTCGAAGA AGCCCTCACC
CGCAGTGCCA AGCGCTATAA CAAGGTGCAA CCCTGGAATG CCTTTGTCAT AGAAGATGAG
CGAGTCATTA CCGGGCAAAA CCCTGCCAGT GCTGGCGCCG TTGGTAAGGC GATAGCCGCC
CACTTAGCTT AA
|
|---|
| Protein sequence | MKKVLIYLTN HATLGDTDEA NGTFAPELTH ALHELLAAGL DYDLVSINGG KAPLYGTDIE
GDEINASMLQ DAAFISRVNN TIPASQIDIQ EYSAIYYPGG FGLLSDLAHN QEVARLSAAH
YENGGVIGAV CHGPAGLLPI TLSTGQKLIA DKSVTGFTRE EEVDYGTIDK IPFLLEEALT
RSAKRYNKVQ PWNAFVIEDE RVITGQNPAS AGAVGKAIAA HLA
|
|---|
| |