| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3104 |
|---|
| Symbol | |
|---|
| ID | 4922209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3684492 |
|---|
| End bp | 3685076 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640164714 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001095229 |
|---|
| Protein GI | 127514032 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.428011 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA GCAGCAAACG CACCAAGAAA CAGGCCATCC TAGAGACCGC CCTGCAGTTG
TTCGTCAGTC AGGGCTTTCA TGGCACCAGC ACGGCCACCA TCGCCCGCGA GGCGGGGGTC
GCGACAGGTA CCCTGTTTCA CCATTTCCCC TCCAAGGAGC AGCTGCTCGA GCAGCTGTTT
CTAGGCGTAA AACAGGAATT TGCCGACGCC ATACAAGCGA GCGTCAGCAG CCGAGGCGAC
CTCAAGCAAG ATGCCGAGCA GCTCTGGTTT GCGGCGCTGA CCTGGGCCAT GGCCAATCCG
CTCAAGCAGG CGTTTTTTCA GCTCTACTCC ATGTCACCCA CCGTCGAACA GTCGGTGCGG
GATCAGGCGA TGCACGGCAT CCTAGGCTTT ATTGCCGAGT TGATCCGCCA GGGCCAGGCA
AGCGGCGAGC TGGCCGAGTA TCCCATTGAG CTGATGCAGG ACAACTGCCA CGGCCAATAC
CTGGCCGCCA CCCGCTACTT TGTCGACCAC CCGGAGCGTT GGCAGCAAGC CCATGAGCGC
AGCGCCAGCT TCGCCCTGTT TTGGAATGCG ATGGCGGTGC GGTGA
|
|---|
| Protein sequence | MTASSKRTKK QAILETALQL FVSQGFHGTS TATIAREAGV ATGTLFHHFP SKEQLLEQLF
LGVKQEFADA IQASVSSRGD LKQDAEQLWF AALTWAMANP LKQAFFQLYS MSPTVEQSVR
DQAMHGILGF IAELIRQGQA SGELAEYPIE LMQDNCHGQY LAATRYFVDH PERWQQAHER
SASFALFWNA MAVR
|
|---|
| |