| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3097 |
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| Symbol | |
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| ID | 4922261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3676984 |
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| End bp | 3679155 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164707 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001095222 |
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| Protein GI | 127514025 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.582192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTA AGCCTATTTC GCTCGCTATC TTCTGCGCCC TGAGCATGGC GACTATGCCA
GGCCACGCAG AGAATCAAAC TGCTCCACTA GACAATGACA GCCAACAGGA CAACCTGAAC
ATCGAGAAGA TCGAGGTTCG CGGCCGTTAT GTGCAGGGCT ACAATGCCCA CTCGGTCGGC
GGCGCCTCGC GCCTGGATCT GGCCATCATA GATATTCCAC AGTCGGTGTC TGTGATCACA
GATGCTCAGC TGGACGACTT CCAGCTCAAC GACATCAACA GCGCCCTGGA CAGCGCCACC
GGCATCAATG TCGAGCGCAT CGAGACGGAC CGCACCTACT ACACGGCCCG CGGCTTCGAC
ATCACCAACT TCCAGATCGA CGGTGTCGGC CTGCCACTGA CCTCAGGCAA CAACCACGCC
GACGAAGACA CCGCCATCTA TGATCGCATC GAGGTGATCC GTGGCGCCAA CGGCCTGATG
ACAGGTGTGG GTAACCCCTC GGCCACGGTC AATTTCATTC GTAAGCGTCC GACCTCTGAC
AATCAACTCA AGCTCCAGGC CAGCTATGGT AGCTTCAACA ACGCCAGAGT CGAGGCCGAT
GCCAGTGGCC GCCTCAACGA CAACTTCGCC GCCCGCGTGG TGGCGGTAAA ACAGCAGAAA
GACTCCTACC TCGATCGCTA CGAGACAGAC AAGAGCGTGC TCTACGCCTT CATCGAGGCC
AACCTGAGTG ACGACACCAG CCTGTCGGTC AGCCACAGCT ACATCAACAA CGATGCCACA
GGTAACAACT GGGGCGCCCT GCCGCTCTAC TACACAGACG GCAGCCCAAC CAACTACGAC
AGATCCACCA ACACCTCGGC CAACTGGTCG AACTGGCAGG TGATCAAGAA CAACACAGTG
GTAGAGCTGA GCCACTACTT CGCCGACGAT TGGCGCCTGC GTGCCACCTA CTCCCACAAG
AGCACGGATG AAGATACCGA GCTCTTCTAC GTCTATGGCA CCCCCGACAG AGAAACCGGC
CTTGGCCTCA CCGGCTATGG CAGCGAATAC GATCTGGATG AGAGCCATGA TCTGGTGGAT
CTCTATGTCG ACGGCGAGTT CAGCCTGTTT GGCCGCGACC ATCAACTGGT GGCCGGGGTG
AACTACGCCA AGGTAGACTA TATCGACACC TCGCTATACG ACTACACCAC GGGCAACGGC
TTCCCGGCCA TGCCAGATCT CAACGACTGG GATGGCAACA CGCCTAAGCC AGTTTTTGCC
GACAGCCCAC GAGGCAGTGA CGTTAGCGCC AAGCAGCAGG CCGCCTACTT CACGGGTCGC
TTTAACCTGT TCGACGGTTT CCACTTCATC GCCGGCGGCC GCTTCAACAA GTGGCAGGCC
GAAGGCGTCT CCTACGACAA GGTGCAAGAC GTGGAAGACA GCCAGTTTAT TCCATACCTG
GGCGCCGTCT ATCGTATCAC CCCTGAGCTT GTGGCCTACG CCAGCTATAC CGAGACCTTC
AAGTCGCAAA CCGAGATGGA TATCGACGAC AACCTGCTGG CCCCCGTGAC GGGTGAGAGC
AAGGAGATAG GCTTCAAGAG CGAGCTGTTC GACGGCCGCC TGATCGCCAG CCTGGCCTAC
TTCGACATCC AGCAGGTCAA CCTGGCGGTG CCCGATCCCC GCACCGCCGA TCTGCCGCCG
ACCGACCAGC GCTACATAGG TGCCGATGGC ATCAACAGCA AGGGCTATGA GTTTGAGGTA
GCCGGTGAGG TGTTCGACGG CCTCAACCTG AGCCTGGGCT TCACCGACTT CGACATCGAT
GGCAATGACG ACAACGCCAA GATTGTCGCC GCCTACACCC CGAGTCGCCT GCTGAAGTTT
GCCGCCACCT ATGACGTGGC CGCCATCGAA GGCCTCTCTG TGGGGATGAA CATGCGCTGG
CAGGATGATA TCTACCGCGA TCAGGGCGTG GTCGGCGACG GCTTTGCCAA TGCGGGCGAG
GCGATCATCA CCCGCCAGGG CGCCTATGCC ATCGTCGATC TCATGGCCCG CTATCAGTTT
AATGACAATC TGCAGCTGAG CCTCAACGCC AACAATGTGA CCGACGAGAA ATACCTCAAC
AGTCTCTATT GGGCCCAGGC TTTCTACGGC GCCCCGGCGA ACTACAGCGC CACCATTACC
TGGAAGCTCT AG
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| Protein sequence | MKLKPISLAI FCALSMATMP GHAENQTAPL DNDSQQDNLN IEKIEVRGRY VQGYNAHSVG
GASRLDLAII DIPQSVSVIT DAQLDDFQLN DINSALDSAT GINVERIETD RTYYTARGFD
ITNFQIDGVG LPLTSGNNHA DEDTAIYDRI EVIRGANGLM TGVGNPSATV NFIRKRPTSD
NQLKLQASYG SFNNARVEAD ASGRLNDNFA ARVVAVKQQK DSYLDRYETD KSVLYAFIEA
NLSDDTSLSV SHSYINNDAT GNNWGALPLY YTDGSPTNYD RSTNTSANWS NWQVIKNNTV
VELSHYFADD WRLRATYSHK STDEDTELFY VYGTPDRETG LGLTGYGSEY DLDESHDLVD
LYVDGEFSLF GRDHQLVAGV NYAKVDYIDT SLYDYTTGNG FPAMPDLNDW DGNTPKPVFA
DSPRGSDVSA KQQAAYFTGR FNLFDGFHFI AGGRFNKWQA EGVSYDKVQD VEDSQFIPYL
GAVYRITPEL VAYASYTETF KSQTEMDIDD NLLAPVTGES KEIGFKSELF DGRLIASLAY
FDIQQVNLAV PDPRTADLPP TDQRYIGADG INSKGYEFEV AGEVFDGLNL SLGFTDFDID
GNDDNAKIVA AYTPSRLLKF AATYDVAAIE GLSVGMNMRW QDDIYRDQGV VGDGFANAGE
AIITRQGAYA IVDLMARYQF NDNLQLSLNA NNVTDEKYLN SLYWAQAFYG APANYSATIT
WKL
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