| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3088 |
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| Symbol | |
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| ID | 4922252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3669386 |
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| End bp | 3670696 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164698 |
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| Product | short chain fatty acid transporter |
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| Protein accession | YP_001095213 |
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| Protein GI | 127514016 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2031] Short chain fatty acids transporter |
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| TIGRFAM ID | [TIGR00366] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAATA AGGCCGCAAA ACCTCTGGTC AAGTTGGTCG ACCGCTATCT GCCCGACCCC
TATATTTTCG TCTTACTCCT CACTCTGCTG GTGTTTGTCG CCGCCATGAT GGTGGAGCAA
CAGAGCCCGC TGCAACTGGT GACCTACTGG GGCCAAGGCT TCTGGGCGCT GCTCAGCTTC
TCGATGCAGA TGTTGCTGGT GCTGGTGGCC GGTTACATGC TGGCCAGCTC GCCGCCCATT
AAACGCCTGC TAGATAGTAT CGCCGCCCTG GCCAAGAGTG CGCCCCAGGC GATCATACTA
GTGACTCTGG TGTCGCTGCT CGCCAGCTGG ATCAACTGGG GCTTCGGCCT GGTGGTCGGC
GCCCTGTTTG CCAAGGCGCT GGCGCGTCAG GTGAAGGTGG ATTATCGCCT GCTGGTGGCC
AGTGCCTATT CGGGCTTCGT GGTCTGGCAC GGCGGCCTGG CGGGTTCGAT TCCCCTGACC
ATAGCCACCA AGGGGCATTT CGCCGAGGAC AAGATAGGCA TCATAGCCAC AGACAATACC
ATTTTCGCCG GCTTTAACCT GGCGCTGGTG GCTGTTCTGT TCGTGCTGAT CCCCCTGGTT
AACCGCTTCA TGTTGCCAAG CGATGATGAG AGCATCTATG TCGACAGGGA CAAGCTAGCT
GAGCCCGAGG TCGAGACCGA GGCGATCACC CGCCCGGCGG ATTATCTGGA AAATAGCCGC
CTGCTGGCCT GGGCCGTGGG TGGGGCAGGC CTGGTCTACC TGGGGCAATA CTTCTTCGCT
GCCGGTGGTA AACTCAACCT GAATATCGTC AACTACCTGT TTCTGTTCCT CGCCATCATC
CTGCATCAGA CGCCTCGCAG CCTGCTGACC AGTCTTAATG AGGCGATCAA GGGCGGCGCC
GGCATAGTGA TCCAGTTCCC CTTCTATGCG GGGATCATGG CGCTCATGGT GCAGTCGGGT
CTGGCTCAGA GTATTTCGTC GGGGTTCGTG GCCATCGCCA GCGCCGACAG CCTGCCGTTC
TGGAGTTTCA TCAGCGCCGG TATCGTTAAC ATCTTCGTGC CGTCCGGTGG TGGCCAGTGG
GCGGTGCAGG CACCTATCAT GTTGCCCGCC GCCGAGGCGC TGGGCGCAGA TGTGGCAAGG
GTCGCCATGG CGGTGGCCTG GGGCGATGCC TGGACCAATC TGATCCAGCC CTTCTGGGCC
CTGCCCGTGC TGGCGATCGC AGGTCTTAAG GCGCGGGATA TTATGGGCTT CTGCCTGATG
CAGCTGATCA TCACAGGCAT AGTGATCAGT ATCGGTCTGA CCTGGTTCTA G
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| Protein sequence | MLNKAAKPLV KLVDRYLPDP YIFVLLLTLL VFVAAMMVEQ QSPLQLVTYW GQGFWALLSF
SMQMLLVLVA GYMLASSPPI KRLLDSIAAL AKSAPQAIIL VTLVSLLASW INWGFGLVVG
ALFAKALARQ VKVDYRLLVA SAYSGFVVWH GGLAGSIPLT IATKGHFAED KIGIIATDNT
IFAGFNLALV AVLFVLIPLV NRFMLPSDDE SIYVDRDKLA EPEVETEAIT RPADYLENSR
LLAWAVGGAG LVYLGQYFFA AGGKLNLNIV NYLFLFLAII LHQTPRSLLT SLNEAIKGGA
GIVIQFPFYA GIMALMVQSG LAQSISSGFV AIASADSLPF WSFISAGIVN IFVPSGGGQW
AVQAPIMLPA AEALGADVAR VAMAVAWGDA WTNLIQPFWA LPVLAIAGLK ARDIMGFCLM
QLIITGIVIS IGLTWF
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