Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3081 |
Symbol | |
ID | 4922324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3657178 |
End bp | 3659751 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640164691 |
Product | TonB-dependent receptor |
Protein accession | YP_001095206 |
Protein GI | 127514009 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAACAC ATAAAAATAA AGGTTTCGGC GTCAGTGCGC TGAGTTTTGC CATCTCTTTG GCATTGACAG GGTCGTTAGC GAGTACACAG GCGTTGGCCG ATGATCAGCA GGCAGAAGCG TCTCAGAATA TTGAAAAAAT TGCCGTGGTG GGAACACGTT CTGCGCCACG CTCTATCGGC GATTCGCCGG TACCTATCGA TATCATTAGC AGCGATGATC TGAAGAAGAA TGGTTCTACC GACATGATCG ACATGCTGGT CACCACTGTG CCTTCTTTCA ACTCCCGTGC CCAGCCCATC AGTGATGCGG CAACCCTGAT CCGTCCGGTC AACCTACGTG GTCTGCCGTC AGACAGCACC TTGGTATTGG TCAACGGCAA ACGTCGTCAC CGCGCCTCGG TGATCGCCTT CCAGGGCGGT GGCATCAACG ATGGTGCCCA GGGCCCGGAT ATCTCGGTCA TTCCGAGTGC GGCGCTGAAA CAAGTAGAGG TGCTACGTGA CGGTGCGGCG GCGCAATATG GTTCAGATGC CATCGCGGGT GTGATGAACT TTGTGCTTAA AGATGATGCC GAAGGTGGCT CTATCACGGT CGGCCAAGGC GAATACTATG AGGGCGACGG TGCCACTACC ACTATCGATG CCAACGTGGG ACTCCCTCTG TCAGACGCTG GGTTTGTGAA CCTCAGTCTG CAATATAAGA ATGCCGATGC GACCAGCCGC AGCATGCAGC GTCCGGATGC GGCCAACCTG ATTGAGCAGG GCAACACCTT CGTCCAAGAC CCTGCCCAGG TATGGGGTAA CCCTGAGATC AAGGATGACT ACAGCTTCTT CCTTAACTCT GGCTACGACA TCAACGACAA TGCGCGTCTG TACGCCTTTG GTAACCTCTC TTCGCGCGAT GTGGTCGGTG GTTTCTACTA TCGTAACCCC CACAATCGCG GCAACGTCTA CTCGTTAGAT GGCGGTGAAA CCCTGTTGGT GGGTGCGGTC AATGGCGATC CTTCTACCTG TGCCGTGGTG CCAATTCCAA AGAATGCAGA TGGTAGCGAC GGTAACGTGC TCGAGACAGA TGCCTACAAG GCGATGCTGG CCGATCCTAA CTGTTTCGCT ATGAACCAGC TGCGTCCTGG CGGTTATACG CCGCAGTTTG CCGGTACTGT GGAAGACACC TCTTTCTTCG CCGGCGTTAA AGGCGAGCTC GGTGCCTGGA ACTATGATTT CAGCGCGGGT ATGGGTAACA ACAAGTCGAC CTTCAGCCTG AAGAATTCGC TTAACCCGTC ACTGGGCTTA GACACACCGA CCGACTTTGA AACCGGTGCC TATGAGCAGG CCGAGACCAC GGTTAACCTG GACTTCTCGC GCATGCTCAC CCTGGGCAGC GTCGAAGATA TCAGCTTCGC GACAGGTTTC GAGTGGCGCG AAGAGTCGTT CGAGATCACT CAGGGCGAAG AAGCCTCTTG GATTGCCGGC CCATACGCCG ACCAGGGCTT CAACATCGGC TCTCACGGCT TCAAGGGTTT CGGCCCAGAG TCTGCTGGTA AGAACTCACG TAACAACATA GGCGTCTATG CCGACATGGA AGCCTATTTG GGCGAGCGCT GGTTGCTTGG CGCCGCGCTG CGTTACGAGG ACTTCTCTAC CTTCGGTGAC ACCCTGAACT ACAAGCTGAC TGCTCAGTTC ACGGCTACCG ACGATCTCTC TTTCCGCGCG TCACACAGCA CAGGTTTCCG TGCGCCGACC GTGGGTCAGG AGAACGTGGT CAACACTCAG ACCTCCATCG TTAACGGTGA CCTGATCCAG ACCTTTATCG CGCCGCCAAC CGATCCGCTG TCGGCCTTCT ATGGCGGTAA GGTGCTTAAG CCTGAGGAGT CTGTCAGTTA CGCCCTCGGC GCCGTGTTCG AGCACGAAAA TCTTTTCGTG ACTCTGGATT ACTACAACAT CGAGGTGACA GGCCGTATCG CGCAGTCAAG CCAGATTGAA GTTGAGGCGA AAGACTATGA CGCGCTGCGC GCCGCCGGTG TCGAGTTCCC TGAGCTTATT TCTGCGGTGA CTTACTACAC CAACGACTTC GATACCACGA CTCAGGGTAT CGATCTGGTG GCCTCATACG ACACTCAGCT ATTGTCGGGC GATACCAAGT TCAGCCTGGC CTATGGCTGG ACTGATACTA GCGTCGACAA GTACAACCCA AATACCACAG ATGAGGGTAA GGTGCGTCGT CTAGAAGATG GTATTCCGGC TCACCGTGCG ACTCTGACCT GGGCGCAGTC TTGGGACAGA TTCAGCATGT CGCTGCGTGG TAACTACTTC GGTGAGTACT ATGCGACCCA CGCCGACGAT ACCTCGGATT GGGGCTCTGA GATGGCCGAT TCTGCGGTGA CCGTGGATCT GGAGCTAAGC TATCAGTTCC TCGATAGCCT GACTGTCTCT ATCGGTGCCA ACAACCTGTT CGATCAGGAG GCGCAGAAGC TCAAAGACGG TACCCGTGGT GAGCTAGGTG CGATCTACTA TGAGAGTGGC CCGTTCGATT ACAACGGTGG CTACTACTAT GGTCGCGTGA ACTACCGCTT CTAA
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Protein sequence | MTTHKNKGFG VSALSFAISL ALTGSLASTQ ALADDQQAEA SQNIEKIAVV GTRSAPRSIG DSPVPIDIIS SDDLKKNGST DMIDMLVTTV PSFNSRAQPI SDAATLIRPV NLRGLPSDST LVLVNGKRRH RASVIAFQGG GINDGAQGPD ISVIPSAALK QVEVLRDGAA AQYGSDAIAG VMNFVLKDDA EGGSITVGQG EYYEGDGATT TIDANVGLPL SDAGFVNLSL QYKNADATSR SMQRPDAANL IEQGNTFVQD PAQVWGNPEI KDDYSFFLNS GYDINDNARL YAFGNLSSRD VVGGFYYRNP HNRGNVYSLD GGETLLVGAV NGDPSTCAVV PIPKNADGSD GNVLETDAYK AMLADPNCFA MNQLRPGGYT PQFAGTVEDT SFFAGVKGEL GAWNYDFSAG MGNNKSTFSL KNSLNPSLGL DTPTDFETGA YEQAETTVNL DFSRMLTLGS VEDISFATGF EWREESFEIT QGEEASWIAG PYADQGFNIG SHGFKGFGPE SAGKNSRNNI GVYADMEAYL GERWLLGAAL RYEDFSTFGD TLNYKLTAQF TATDDLSFRA SHSTGFRAPT VGQENVVNTQ TSIVNGDLIQ TFIAPPTDPL SAFYGGKVLK PEESVSYALG AVFEHENLFV TLDYYNIEVT GRIAQSSQIE VEAKDYDALR AAGVEFPELI SAVTYYTNDF DTTTQGIDLV ASYDTQLLSG DTKFSLAYGW TDTSVDKYNP NTTDEGKVRR LEDGIPAHRA TLTWAQSWDR FSMSLRGNYF GEYYATHADD TSDWGSEMAD SAVTVDLELS YQFLDSLTVS IGANNLFDQE AQKLKDGTRG ELGAIYYESG PFDYNGGYYY GRVNYRF
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