Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3073 |
Symbol | |
ID | 4922316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3648126 |
End bp | 3648794 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640164683 |
Product | uracil-DNA glycosylase |
Protein accession | YP_001095198 |
Protein GI | 127514001 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0692] Uracil DNA glycosylase |
TIGRFAM ID | [TIGR00628] uracil-DNA glycosylase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.906111 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAGA TCAGCCAATG GCAAGATTTT ATTGACCAGG AGGCCAAGCA AGCCTATTTT GGCCAGTTGC AGGCTTTCGT GCAAGGTGAG CGCGATGCCG GTAAGGCGAT CTATCCGGAA AAGGATCAGG TGTTTAGCGC CTTCGAGCTA ACGCCGCTGG ATAAGGTTAG GGTGGTGTTG ATTGGTCAAG ACCCTTATCA CGGCGAGGGC CAGGCGCACG GCCTCTGCTT CTCGGTGCAG CCCGGGGTGA AGGTGCCGCC ATCTTTGGTG AACATGTATA AGGAGCTGGC CAGTGATATC GATGGCTTTG AGATCCCAGA TCATGGCTAT CTGGCGAAGT GGGCAGAGCA GGGCGTCTTG ATGCTCAATA CTGTACTCAC GGTAGAGCAG GGTAAGGCGC ACTCCCATGC CAAGGCGGGG TGGGAGACCT TTACCGACAA CGCCTTGAGG CAGCTTAATG AGCAGGAGCG CCCGATTATT TTCGTGCTGT GGGGCGGCCA CGCCATGAAG AAGAGCAAGC TTATCCAGGC GGAGCAGCAC CATCTGGTGA GCGGGCCTCA CCCTTCACCG CTCTCTGCCT ACCGAGGTTT CTTTGGCTGT AAACACTTCT CAAAAATCAA CGAGTTGTTA AAGGCCTCTG GCGAGGCGCC TATCGACTGG CAGGTATAA
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Protein sequence | MTEISQWQDF IDQEAKQAYF GQLQAFVQGE RDAGKAIYPE KDQVFSAFEL TPLDKVRVVL IGQDPYHGEG QAHGLCFSVQ PGVKVPPSLV NMYKELASDI DGFEIPDHGY LAKWAEQGVL MLNTVLTVEQ GKAHSHAKAG WETFTDNALR QLNEQERPII FVLWGGHAMK KSKLIQAEQH HLVSGPHPSP LSAYRGFFGC KHFSKINELL KASGEAPIDW QV
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