| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3053 |
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| Symbol | |
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| ID | 4922792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3625140 |
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| End bp | 3626402 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164663 |
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| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
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| Protein accession | YP_001095178 |
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| Protein GI | 127513981 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTTGA AAAATATGCG GGTACAGCGC AAGTCTAGAA CGGATAAAGC TGGGCTAAGA
GCGTGGGCTA GTAACCTAGT GAGTGCCTTG TTGGTCGCCT TTGCCAGTAT CCTAGCCGGT
GTCCTGGTCA GTGGCTGTAA CAGTGATGAT GAGGAGGCGC TAAACCCCAT CGACACGGCC
AAGATGCAGC AGACGGTGGC TGAGCTGGCC GAGGATATGT TGGTGCCGGG CGCCGTGGTG
ATACTGCATA CCCCCAAGGG TAGCTTTGAA TATACCTATG GGGTGAGCCA GTATAGCGGC
AGTGAGCCAA CCCGTTTCGA TCAGCACCTC CGGGTTGGCT CCAATACCAA GACCTGGGTC
GGTACAATCA TTTTGCAGAT GGTGCAGGAG GGTAAGCTCC AGCTAGAAGA TCCCGTGGCC
ATGCACTGGA CCGGCGTGCC GAGCGGTGAG CAGATCACCA TAGCTCAGCT GCTGTCGATG
GAAAGCGGCC TGCATAACTA CACCACCACA TTGGCGCTGA ATCAGATCTT AGATCAGGAT
CCCGCTTATG CCTGGCCCCA AGCTGAGCTG CTTAAGCTGA GTTTCGACTA TCCGCTGGAT
TTTACGCCGG GCACAGACTT TGGTTACTCC AACACCAATA CGGTATTGCT TGGCCTGATT
GCCCAGAAGC TTGATGACAG CACCTTGCCT GAGATCATGC AGCGCCGCCT GTTTGCTCCC
CTAGGCATGA CACAAACCCT GTTTCCTGAG ATCACCGATA ACGTCCTGCC CGAGCCCTAT
GCCCACGGCT ATATGTATGG CACCAATGTG TTGACCATGG ACTCGGCGTT GCCCGAGGCG
ATGCAGCAGG AGGCGCGTGA TGGGGTGATA ATGCCGGGGG ATCAGACCGA GGCTAATCCC
TCCTGGGGCT GGGCGGCTGG CGCGGGGATC TCTACCGCCA GGGAGCTGCT GGTCTGGGTC
GAGGCCTTGG TTCGCGGCAA ACTGTTAAAT GAGGAGATGC AGAAACTGCG TCTGGCAAGC
GTTAAGCCTA TCGATCCCGA CAATCCCAAC ACCGCCTACT ATGGCCTGGG CATAGCCAAG
TTTGGCCTGC TCTATGGTCA TACAGGCGAG CTGCCGGGTT ATAACTCTTT CATGGGCCAT
GACCCAGACA ATAAGGTTAC CCTGGTGGTC TGGACCAACC TGGCCCCTAG CGTGGATGGG
CGCGACCCGG CCACTACGAT CGCGGCGGCG CTCATCAATC AAGTCTACAG GCCGGTAAAC
TAG
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| Protein sequence | MMLKNMRVQR KSRTDKAGLR AWASNLVSAL LVAFASILAG VLVSGCNSDD EEALNPIDTA
KMQQTVAELA EDMLVPGAVV ILHTPKGSFE YTYGVSQYSG SEPTRFDQHL RVGSNTKTWV
GTIILQMVQE GKLQLEDPVA MHWTGVPSGE QITIAQLLSM ESGLHNYTTT LALNQILDQD
PAYAWPQAEL LKLSFDYPLD FTPGTDFGYS NTNTVLLGLI AQKLDDSTLP EIMQRRLFAP
LGMTQTLFPE ITDNVLPEPY AHGYMYGTNV LTMDSALPEA MQQEARDGVI MPGDQTEANP
SWGWAAGAGI STARELLVWV EALVRGKLLN EEMQKLRLAS VKPIDPDNPN TAYYGLGIAK
FGLLYGHTGE LPGYNSFMGH DPDNKVTLVV WTNLAPSVDG RDPATTIAAA LINQVYRPVN
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